Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 576 a.a., single-stranded-DNA-specific exonuclease RecJ from Dickeya dianthicola ME23

 Score =  637 bits (1642), Expect = 0.0
 Identities = 326/555 (58%), Positives = 409/555 (73%), Gaps = 4/555 (0%)

Query: 18  LPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFD 77
           LP LL RLYA RGV+   EL++SL  L+ Y+ L GI  AV++L  AL   +RI++VGDFD
Sbjct: 21  LPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADNRRIMVVGDFD 80

Query: 78  ADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLLITVDNGIS 137
           ADGAT++ +  L LR +G   + YLVPNRFE GYGL+PE+VA A  +  +L++TVDNGIS
Sbjct: 81  ADGATSTALTVLALRSMGGREIQYLVPNRFEDGYGLSPEVVAQAAAKGAELIVTVDNGIS 140

Query: 138 SVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197
           S  GV  A   G+ V+VTDHHLPG+ LPAA+A++NPN   C FPSKALAGVGV FY++MA
Sbjct: 141 SHAGVDDAHRRGIAVVVTDHHLPGETLPAAEAMINPNLSDCAFPSKALAGVGVAFYLMMA 200

Query: 198 LRARLRSLGWYDNT--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRAR 255
           LRA LR  GW+      +PN+ ELLDLVALG+VADVVPLDANNRIL+ QGL RIRAG+ R
Sbjct: 201 LRANLRESGWFAERGLAEPNLAELLDLVALGTVADVVPLDANNRILISQGLSRIRAGKCR 260

Query: 256 PGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDFAAAREMAAQ 315
           PGI+A+LEV+ RDA ++ ++DLGF LGPRLNAAGRLDDMS+G+E LL  D   AR +A+ 
Sbjct: 261 PGIRALLEVSNRDAVQLVASDLGFALGPRLNAAGRLDDMSVGVELLLCDDIVQARMLASD 320

Query: 316 LDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDPEWHQGVIGILASRMKERY 373
           LD +NQ R+ IE GMQ EAL   + L    +++P GL ++ PEWHQGV+GILASR+KER+
Sbjct: 321 LDALNQSRREIEAGMQVEALHLCEQLERSRDTLPLGLAMYHPEWHQGVVGILASRIKERF 380

Query: 374 FRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGLTLPEEN 433
            RP IAFA AGDG+LKGSGRS+ G H+RDAL  + + HP L+ K+GGHAMAAGL+L E+ 
Sbjct: 381 HRPVIAFAPAGDGILKGSGRSIAGLHLRDALERLDTCHPGLMLKFGGHAMAAGLSLVEDR 440

Query: 434 FPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFH 493
           F  F + F   V   L    L G + SDG LA+ E  L  A  LR AGPWGQ FPEP F 
Sbjct: 441 FDEFRQRFAELVGEWLDASQLEGVVWSDGELAIPELTLGTAEMLREAGPWGQAFPEPTFD 500

Query: 494 GVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNEF 553
           G F+L++QR+VGERHLKV+++   G   LDGIAF +D  +WP+ +VR VELAYKLDVNEF
Sbjct: 501 GRFRLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNIDTLLWPDSSVREVELAYKLDVNEF 560

Query: 554 RGNETVQLMIAHIEP 568
           RG  +VQL+I H+ P
Sbjct: 561 RGKRSVQLLIEHLWP 575