Pairwise Alignments

Query, 880 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 318 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 73/306 (23%), Positives = 145/306 (47%), Gaps = 14/306 (4%)

Query: 40  VTLLLFAIALIACRHLLLELDLYALHDSILEVPKPALLGAFAAAVAGFIILLGYEFSGAR 99
           +T L F   ++       ++D   +   I +  + ALL A    V  ++I   Y+     
Sbjct: 15  LTWLFFIAVIVLLVVYAKKVDWEEVWKVIRDYNRVALLSAVGLVVVSYLIYGCYDLLARF 74

Query: 100 YAGVNLPAKTLALGGFTAFAIGNAIGLSMLSGGSVRYRLYARHGIGASEVARMTVFASLA 159
           Y G  L  + + L  F  +A    +  + + G  +RYRLY+R G+  S + R+   +   
Sbjct: 75  YCGHKLAKRQVMLVSFICYAFNLTLS-TWVGGIGMRYRLYSRLGLPGSTITRIFSLSITT 133

Query: 160 LGTALPPLAALATLSNLPAASTYLHLPQAVLGGIA-GAVLLLSAALCIGIYRRRLPEQPY 218
                  LA +   + +     + ++ Q  L  +  G +++++  L    + +       
Sbjct: 134 NWLGYILLAGIIFTAGVVELPDHWYVDQTTLRILGIGLLMIIAVYLWFCAFAKHR----- 188

Query: 219 PDNLLVKAGRRTLRLPGRRLTFLQLIITALDVAAAATVLYMLLPEAPPFGPFLLVYLLAL 278
             ++ +K  +  L LP  +    Q++I++++      ++++LL ++  +   L V L++ 
Sbjct: 189 --HMTIKGQK--LVLPSWKFALAQMLISSVNWMVMGAIIWLLLGQSVNYFFVLGVLLVSS 244

Query: 279 AAGVLSHVPGGVGVFEAILLAAFA-DKLGAAPLAAALLLYRMIYVVLPLLIA--CVFLLV 335
            AGV+ H+P G+GV EA+ +A  A +      + AALL YR++Y  +PLL+A  C  LL 
Sbjct: 245 IAGVIVHIPAGIGVLEAVFIALLAGEHTSKGTIIAALLAYRVLYYFIPLLLALICYLLLE 304

Query: 336 NEAQRL 341
           ++A++L
Sbjct: 305 SQAKKL 310