Pairwise Alignments

Query, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

Subject, 351 a.a., DNA polymerase IV (NCBI) from Escherichia coli BW25113

 Score =  318 bits (816), Expect = 1e-91
 Identities = 171/339 (50%), Positives = 227/339 (66%), Gaps = 2/339 (0%)

Query: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63
           RKIIHVD DCF+AA+EMRD+P+L   P+A+GGS +RRGVI+T NY AR +GVRSAM +  
Sbjct: 2   RKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM 61

Query: 64  ALKLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSHFGGSATR 123
           ALKLCP LT++  R +AYKEAS  I+ IF  YT  IEPLSLDEAYLDV+DS H  GSAT 
Sbjct: 62  ALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATL 121

Query: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183
           IAQ+IR+ + N+L +T SAGVAP KFLAKIASD  KPNG FVITP +V  F+  L ++K+
Sbjct: 122 IAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKI 181

Query: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQ 243
            GVGKV+A KL  +G+  C  +++ + + L++ FG FG  LW  ++GID+R V ++  R+
Sbjct: 182 PGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRK 241

Query: 244 SISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLE 303
           S+ VE T   D+   S C A +  L   L  R+A++       +  VK+KF DF QTT E
Sbjct: 242 SVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQE 301

Query: 304 QAGAGRDLESYQQLLTQAFN--RGGKPVRLLGIGVRLLD 340
                 +         + ++  RGG+ VRL+G+ V LLD
Sbjct: 302 HVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLD 340