Pairwise Alignments

Query, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

Subject, 357 a.a., DNA polymerase IV from Alteromonas macleodii MIT1002

 Score =  341 bits (875), Expect = 1e-98
 Identities = 178/342 (52%), Positives = 238/342 (69%), Gaps = 9/342 (2%)

Query: 4   RKIIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRH 63
           RKIIHVD DCFYAA+EMRD+P+L   P+A+GGSADRRGVI+TCNY AR +GVRSAM++ +
Sbjct: 2   RKIIHVDMDCFYAAVEMRDNPALRDIPIAIGGSADRRGVISTCNYPARKFGVRSAMATAY 61

Query: 64  ALKLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSHFGGSATR 123
           ALKLCP+LT+VK RM+ Y   S++I+ IF DYTDLIEPLSLDEAYLDV++S   GGSAT 
Sbjct: 62  ALKLCPNLTLVKGRMDVYATESQKIRKIFADYTDLIEPLSLDEAYLDVTNSEFCGGSATL 121

Query: 124 IAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKL 183
           IA++IR R+ N+L +T SAGVAP KF+AK+ASD  KP+G+ VITPD++++FV ++ + K+
Sbjct: 122 IAEEIRERIKNELGLTASAGVAPCKFVAKVASDENKPDGICVITPDKLDEFVREMPLKKI 181

Query: 184 HGVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQ 243
            GVGKVT  KL R+G+  C  +R++    + +E G FG  LW  A GID+R +     R+
Sbjct: 182 PGVGKVTMQKLQRMGLNTCDDVRQYPFERIQKELGKFGSVLWERAHGIDERELSVSRERK 241

Query: 244 SISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPF------VKVKFHDF 297
           SI VE T   D+     C+  LP L E L  RM   +   R GKP       VK+KF+DF
Sbjct: 242 SIGVERTLSEDIHTFEQCIDFLPHLFEKLQERME--NHKKRTGKPVRIRTQGVKLKFNDF 299

Query: 298 TQTTLEQAGAGRDLESYQQLLTQAFNRG-GKPVRLLGIGVRL 338
             TT+E   A  D   ++ L+ +AF R  G+ +RL+G+ + L
Sbjct: 300 QLTTVEHRCATLDEAYFRTLMQEAFERATGRGIRLVGVHIGL 341