Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score =  114 bits (284), Expect = 7e-30
 Identities = 92/352 (26%), Positives = 162/352 (46%), Gaps = 38/352 (10%)

Query: 42  VSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLD 101
           V V VA A    + +   ++GT+ AL  +N+   + G +  + FE GQ VK G  L ++D
Sbjct: 66  VPVRVAPAVLGEFPVYYKALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEID 125

Query: 102 -SAVESALLETA------QADLGLAQLDYGRGSQLVGSQAISKGEFDRLSA-------QL 147
             + ++ALL+        QA L  AQ+D  R   L    +I+K   D   A        +
Sbjct: 126 PRSYQNALLQAQGTLMQNQAQLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGTV 185

Query: 148 QKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASG--TVIATLQDLSSLYVDFY 205
           + N+  V+  K +L    I AP  G +G+RQVDVG+ +A+   T +A +     + V F 
Sbjct: 186 KTNQGAVDDAKLNLEFTKIRAPISGRVGLRQVDVGNLVAANDTTFLAVITQTQPISVAFT 245

Query: 206 IPEHAVPKVAPGQ------PVQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANP 259
           +PE+ +  V          PV+        +Q  G + +++ +++ +T  +  +A   N 
Sbjct: 246 LPENTLETVLTRYHAGNKLPVEAWDRGDVKQQAVGVLQSLDNQIDVTTGTLKFKARFDNK 305

Query: 260 EGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKP 319
           +  L P  F  + +L       ++ P  AI +   G  VY +        + +K    +P
Sbjct: 306 DQALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYVL--------DGDKKVKVQP 357

Query: 320 LLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTPIAISPDKN 371
           L++        G+  G   ++ +GLKAG++VV  G  +L +G+ I +  D +
Sbjct: 358 LVV--------GDTDGDNTVIKEGLKAGDRVVLEGTDRLKDGSEIEVVNDSS 401