Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  258 bits (658), Expect = 3e-73
 Identities = 147/369 (39%), Positives = 217/369 (58%), Gaps = 12/369 (3%)

Query: 9   MLGVVLLIVLLLAGYKAFSIYQQIQVFSKPKPAVSVAVATATEQPWQLRVSSVGTLKALQ 68
           M+G VLL+V  LA  K   I   I    KP P  +V+     +  WQ + ++VGTL  ++
Sbjct: 1   MIGCVLLLVAALALGKFLQIRALIAAVPKPGPQ-TVSTVEVQKLQWQSQFTAVGTLNPVR 59

Query: 69  GVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQ 128
           G +LS E+AG V++V F+SGQ VK G  LV+L++  + ALL +A+A    A     R   
Sbjct: 60  GADLSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQA 119

Query: 129 LVGSQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASG 188
            +  QA+S+ + D     L+  +A V Q  A +AKK I APF G +GI  ++ G Y+ +G
Sbjct: 120 QLAVQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAG 179

Query: 189 TVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENSTR 248
             + TLQ L  +YVDF +P+  +  +A GQ V + V  +PG+ F G I+AI+PKV+ +TR
Sbjct: 180 DKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDAATR 239

Query: 249 NVLVRATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKK--- 305
           NV V AT++NP+  LLPGMF  + + +     ++ +P  A+TY  YG++VY V + +   
Sbjct: 240 NVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPK 299

Query: 306 --------TEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLK 357
                   T       DA GKP L+A++ FVETG  RG  + + KGL+AG+ VVS+GQ K
Sbjct: 300 AGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNK 359

Query: 358 LDNGTPIAI 366
           L NGTP+ +
Sbjct: 360 LKNGTPVTV 368