Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 384 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family from Variovorax sp. SCN45

 Score =  110 bits (276), Expect = 5e-29
 Identities = 101/334 (30%), Positives = 145/334 (43%), Gaps = 36/334 (10%)

Query: 46  VATATEQPWQLRVSSVGTLKA--LQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDS- 102
           VAT  EQ     VS   T++A     VN+   + G + +++   G  VK GQ L  + S 
Sbjct: 68  VATVGEQASPHDVSLPATVEANPASTVNVLPPLTGKLAELKVRLGDTVKRGQVLATMTSP 127

Query: 103 ----AVESALLETAQADLGLAQLDYGRGSQLVGSQAISKGE-----FDRLSAQLQKNKAT 153
               AV  A       DL    L   RG    GS A    E       + +A+L++++  
Sbjct: 128 DLAQAVSDAQKARDALDLAQRALVRARGVNEAGSNAAKDVEAAQSAVAQQTAELRRSETR 187

Query: 154 VNQLKASLAKKH------IVAPFGGTIGIRQVDVGDYLASGTV-IATLQDLSSLYVDFYI 206
           +  L A  +         IVAP  GT+       G  L   T  + T+ +L S++V   +
Sbjct: 188 LRSLGADGSGAQAGQLLKIVAPISGTVTALNAAAGANLNDATATLMTVANLDSVWVTVNV 247

Query: 207 PEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANPEGKLLPG 266
           PE+ V  VAPGQ V V ++A+PG +F G +  ++  +E  TR    R   ANPEG   P 
Sbjct: 248 PENVVGAVAPGQNVTVSLAAFPGRRFTGKVGFVSAVLEADTRRAKARIVFANPEGLFKPN 307

Query: 267 MFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKPLLIAERR 326
           M+    + +P  A Q  VP  A+       SV+  AE  T                  RR
Sbjct: 308 MYATAVLGVPQ-AAQPQVPASALLMNNDAVSVFVEAEPWT----------------FVRR 350

Query: 327 FVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDN 360
            VE G   G  V +  GL AGE+VV  G + L++
Sbjct: 351 MVELGREDGDQVRIRSGLNAGERVVVRGGVLLND 384