Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  106 bits (264), Expect = 1e-27
 Identities = 89/359 (24%), Positives = 150/359 (41%), Gaps = 38/359 (10%)

Query: 35  FSKPKPAVSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTG 94
           F      V V V       + L   ++GT+ A   VN+   +AG +  + F+ GQ+VK G
Sbjct: 58  FGGSSDPVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAG 117

Query: 95  QPLVQLDSAVESALLETA-------QADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAQL 147
             L ++D       L+ A       QA L  AQ+D  R   L    +I+K   D   AQ+
Sbjct: 118 DLLAEIDPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQV 177

Query: 148 QK-------NKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASG--TVIATLQDLS 198
            +       N+A VN  + +L    I AP  G +G+RQ+D+G+ +A+   T +  +    
Sbjct: 178 AQFQGLVKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTE 237

Query: 199 SLYVDFYIPEHAVPKV------APGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNVLV 252
            + V F +PE  +  V          PV+         Q  G + +I+ +++ +T  +  
Sbjct: 238 PINVAFTLPETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKF 297

Query: 253 RATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVE 312
           +    N +  L P  F  + +L       ++ P  AI +   G   Y V E+ T      
Sbjct: 298 KGRFENKDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNEQST------ 351

Query: 313 KDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTPIAISPDKN 371
                        R ++ G   G   ++  GLKAG+++V  G  +L  GT + +  D +
Sbjct: 352 ----------VNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSS 400