Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  196 bits (499), Expect = 7e-55
 Identities = 121/325 (37%), Positives = 180/325 (55%), Gaps = 13/325 (4%)

Query: 40  PAVSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQ 99
           PA  VA+ATA +     +  + G L+A+  V ++ E+ G +  + FESGQ V  GQ LVQ
Sbjct: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96

Query: 100 LDSAVESALLETAQADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAQLQKNKATVNQLKA 159
           L+ A E AL    QA L  A +   R  +L    A+S+   D  +  +   +  +  ++A
Sbjct: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156

Query: 160 SLAKKHIVAPFGGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQP 219
            +A+K I APF G +GIR+V  G YLA+G  I +L D+S L+V+F + E A P+V  GQ 
Sbjct: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216

Query: 220 VQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPNPA 279
           + + V A  G+ F   + A++P V ++ R V V+A L NP+G+L PGM+  + +    P+
Sbjct: 217 LALTVDAVRGQDFQARVVAVDP-VVSTARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275

Query: 280 PQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVL 339
             + VPE AITYT YG +V+   +    G  V             R  V TGER  G V 
Sbjct: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRV------------SRVQVTTGERWQGRVE 323

Query: 340 VSKGLKAGEQVVSAGQLKLDNGTPI 364
           ++ GL  G++VV +GQLKL +G P+
Sbjct: 324 ITSGLTPGDRVVVSGQLKLSDGMPV 348