Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  270 bits (691), Expect = 1e-76
 Identities = 164/386 (42%), Positives = 233/386 (60%), Gaps = 9/386 (2%)

Query: 329 GVVVTLPRNVMLADTLKLQDVLDKAQAAGTLKALLVGAA--AALLGLLLIWLTATGVTRP 386
           G V+     +M A   +++D      AA   K LL  A   A  LGLL  W     +  P
Sbjct: 260 GTVLLQASQMMTASQTEVRDA-----AAAQAKTLLTVATVLALALGLLAAWAITRQIIIP 314

Query: 387 INNVAAMLKDIASGDGDLTQRLAYAKKDELGELANWFNRFLDKLQPTIAQIKQSITEARG 446
           +       + +ASGD  LTQ L   ++DELG+L    +R    L+  I  I   +T+   
Sbjct: 315 LRQTLRAAERVASGD--LTQSLQVQRRDELGQLQASMHRMTQGLRELIGGIGDGVTQIAS 372

Query: 447 TADQSSAIARQTSEGMQVQFREIDQVATASNEMSATAHDVANSASNAASAARGADQSARE 506
            A++ SA+  QTS G+  Q  E DQVATA N+M+AT H+VA +A  A+ AA  ADQ ARE
Sbjct: 373 AAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALMADQQARE 432

Query: 507 GMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIGSVLEVIRSIAEQTNLLALNAAIE 566
           G  ++ ++   I  LA EV  +   +  L   S++IGSVL+VI+S+A+QTNLLALNAAIE
Sbjct: 433 GDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLLALNAAIE 492

Query: 567 AARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVATMHSSQSQAQSN 626
           AARAGE+GRGFAVVADEVR+LA+RTQ S EEI  +I  +QSGT+ V + M +S+    S+
Sbjct: 493 AARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAGLQSGTQRVASVMDNSRQLTDSS 552

Query: 627 AGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSAVAEEVNRNVSAIRTVTETLTGQA 686
                +A  +L  I+  V+ I  MN QIA+AAE+Q+AVAEE+NR+V  +R +++  +  +
Sbjct: 553 VELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAVAEEINRSVMNVRDISDQTSAAS 612

Query: 687 TESAAISSQLNALASQQMKLMDQFRV 712
            E+A+ S +L  L +    L+ +FR+
Sbjct: 613 EETASSSVELARLGTHLQGLVGRFRL 638



 Score = 28.9 bits (63), Expect = 8e-04
 Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 28/197 (14%)

Query: 502 QSAREGMSIIEQSTRDITSLAEEVSKAVGEVEALAVNSEQIGSVLEVIRSIAEQTNL--- 558
           +  RE + I +Q+  ++   A++  +A  +V   + + + +  +  V RS+ +  N+   
Sbjct: 110 EQQREAVRIYQQAFNELKQ-ADQRREASRDVLGSSAD-KAVDLIGRVQRSLLQGANINQY 167

Query: 559 ---LALNAAIEAARAGESGRGFAVVADEVRNLAKRTQDSVEEIRLVIERIQSGTRGVVAT 615
              + ++A ++ AR    G  ++  AD  +   K    ++ E+R +  ++ +        
Sbjct: 168 QHAVDVSALLQQARFQVRGYTYSGNADYQQTALKAIDQALAELRALPAKVPA-------- 219

Query: 616 MHSSQSQAQSNAGQIHQAAQALGKISDAVTVISDMNLQIASAAEQQSAVAE-EVNRNVSA 674
                     +A  +  AA A+G   DAVT     N Q+AS    Q  V +  V    S 
Sbjct: 220 ---------EHAASLDDAATAMGGYRDAVTQFG--NAQLASEQALQRMVEQGTVLLQASQ 268

Query: 675 IRTVTETLTGQATESAA 691
           + T ++T    A  + A
Sbjct: 269 MMTASQTEVRDAAAAQA 285



 Score = 26.2 bits (56), Expect = 0.005
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 34  TNQNDQLISDSSSRMLTSSVQSLLQS--KAGEQAVLLQKTFGENLLVVTALADQVKDLRA 91
           T + ++LI+   S   T  V S++ +  +  + +V L +  G +L  +T     ++ +  
Sbjct: 521 TEEIEELIAGLQSG--TQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQ 578

Query: 92  LAAKRALEPGALREELNQSL 111
             A  A E  A+ EE+N+S+
Sbjct: 579 QIATAAEEQTAVAEEINRSV 598