Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 184 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 63.2 bits (152), Expect = 2e-15
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 13/168 (7%)

Query: 9   VFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARNLALD 68
           +F   R  LLR L R       AEDLLQ+ ++++  A    P+    P++Y+ A NL LD
Sbjct: 22  IFFQNRAALLRFL-RARGAGEDAEDLLQDMWMKL-EAKDLGPVADPLPYLYRMANNLMLD 79

Query: 69  HLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAE------QMLEALSVSLGQLSAR 122
                R ++ T +E    D  +     ++ P D    +      Q LE     L  L  R
Sbjct: 80  -----RYRSATRRERREQDWAEGAGGVMADPNDDLAVDERMILNQRLEQARGILADLGPR 134

Query: 123 QQRIFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAICVGVAERLD 170
            + +F   R+ G   + IA++LGVSL+TV+K+L+      + + + LD
Sbjct: 135 VELVFRRFRIEGVGQRLIAEELGVSLTTVEKDLQKAYRAMLALKQSLD 182