Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 98.2 bits (243), Expect = 7e-26
 Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 6/172 (3%)

Query: 2   SQSRFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQT 61
           +++RF  VF  QR  +   + R V   +TA DL+QE +LR  R   E  ++ L+ ++ + 
Sbjct: 17  ARARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRR-PEVKVEALDTYLLRC 75

Query: 62  ARNLALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSA 121
           A NLA+DHLR+   + R  +  VP+    S A+    PE A + +  L+ +  +L  L  
Sbjct: 76  AGNLAIDHLRSESSRERVAEAAVPV----SEASLAQAPEQAVEVDHDLQRIEATLRALPE 131

Query: 122 RQQRIFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAIC-VGVAERLDRP 172
           R ++IF+L+R+HGC Y EIA  + +S S V+K +   +  C   VAE    P
Sbjct: 132 RTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAEPASTP 183