Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 71.2 bits (173), Expect = 8e-18
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 17  LLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARNLALDHLRARRIQ 76
           L+  L   + +   AED+  + YLRV        I+H   F+Y+TA NL +D  R + ++
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 77  ARTLQENVPLDVLQSVAAPISTP-EDATQAEQMLEALSVSLGQLSARQQRIFILSRLHGC 135
                +  PLD L + +   S+  +   Q +Q L  +  +L +LS   +  F+L ++ G 
Sbjct: 68  -----QAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGL 122

Query: 136 SYQEIADQLGVSLSTVQKELKLIMAIC 162
           S+Q+IA++LG+S S V+K +   M  C
Sbjct: 123 SHQQIAERLGISRSLVEKHIVNAMKHC 149