Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 67.4 bits (163), Expect = 1e-16
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 21  LQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQTARNLALDHLRARRIQARTL 80
           L+  V     A DL Q+T++R+ RA    P+     ++   AR L +D  R R ++ R  
Sbjct: 27  LRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMIDQFRRRALE-RAY 85

Query: 81  QENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQRIFILSRLHGCSYQEI 140
           QE +         A + + ED       LE L  +L QL  R ++ F+L++L G S  ++
Sbjct: 86  QEGLA----HLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLAQLDGLSIVQV 141

Query: 141 ADQLGVSLSTVQKELKLIMAIC 162
           A +LGVS +TV+++L   +  C
Sbjct: 142 AQRLGVSRATVERDLAKALGAC 163