Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 5e-15
 Identities = 51/157 (32%), Positives = 81/157 (51%), Gaps = 11/157 (7%)

Query: 9   VFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDH-LEP--FVYQTARNL 65
           ++   R  LL  LQR +     AEDL Q+T++R+   L    +D   EP  F+   A+ L
Sbjct: 15  LYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRL---LGREQLDTPREPRAFLAAVAKGL 71

Query: 66  ALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLSARQQR 125
             DH R   ++   L E   L ++     P  +PE      + L+A+   LG+LS++ + 
Sbjct: 72  MFDHFRRAALEQAYLAE---LALIPEAEQP--SPEMQHLILEDLKAIDRLLGKLSSKARA 126

Query: 126 IFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMAIC 162
            F+ SRL G  + EIA++LGVS+S V++ +   M  C
Sbjct: 127 AFLHSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQC 163