Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

Subject, 200 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 55.8 bits (133), Expect = 4e-13
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 2   SQSRFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDH---LEPFV 58
           S++ F  +    +  +  T+  +V +   AEDLLQ+ +++V + L+    +     +P++
Sbjct: 20  SEAAFEVLVDKYKSRVFTTIYMIVKDQGLAEDLLQDVFVKVIQTLNSDRYNEEGKFQPWL 79

Query: 59  YQTARNLALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQ 118
            + A NLA+D+ R  +     + E+   ++  ++    S  ED    ++    +   + +
Sbjct: 80  MRIAHNLAVDYFRKMKRYPFIMMEDGS-NLFNTLKFADSNVEDQQVKDETHALVRDLIDE 138

Query: 119 LSARQQRIFILSRLHGCSYQEIADQLGVSLST 150
           L   Q+++ I+      S+QEIADQ GVS++T
Sbjct: 139 LPESQKQVLIMRHYMDLSFQEIADQTGVSINT 170