Pairwise Alignments

Query, 280 a.a., mechanosensitive ion channel protein MscS from Pseudomonas simiae WCS417

Subject, 286 a.a., mechanosensitive channel protein, small conductance from Escherichia coli BL21

 Score =  184 bits (466), Expect = 2e-51
 Identities = 100/276 (36%), Positives = 162/276 (58%), Gaps = 15/276 (5%)

Query: 2   DLNAEVDHLIKTSESWL----PMIMEYGSRFLLAVVTLAIGWWLINVLTHRVGRLLALRN 57
           DLN  VD  I  + SWL     +++ Y    + A+  + +G  +  ++++ V RL+  R 
Sbjct: 3   DLNV-VDS-INGAGSWLVANQALLLSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRK 60

Query: 58  ADLALQHFITSLANIALKVMLVVNVASMIGVATTSFVAAIGAATLAIGLALQGSLANFAG 117
            D  +  F+++L    +    ++     +GV T S +A +GAA LA+GLALQGSL+N A 
Sbjct: 61  IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAA 120

Query: 118 GVLILLFRPFRIGDWIEAQGTSGTVDSIQIFHTVLRTGDNKTVIIPNGSLSNGLITNTNR 177
           GVL+++FRPFR G++++  G +GTV S+QIF T +RT D K ++IPNG +  G I N +R
Sbjct: 121 GVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSR 180

Query: 178 QPTRKVVFDVGVDYEADLQKAREVLLELAK-DPRVLADPAAVAVVSTLGDSSITVSLRCW 236
           +P R+  F +GV Y++D+ + +++L  + + + R+L D      ++ LG SSI   +R W
Sbjct: 181 EPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVW 240

Query: 237 TKTAD----YWDVVFMLNELARDRLKAAGIDIPFPQ 268
           + + D    YWDV+    E  +    AAGI  P+PQ
Sbjct: 241 SNSGDLQNVYWDVL----ERIKREFDAAGISFPYPQ 272