Pairwise Alignments

Query, 432 a.a., porin from Pseudomonas simiae WCS417

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  252 bits (644), Expect = 1e-71
 Identities = 154/411 (37%), Positives = 219/411 (53%), Gaps = 43/411 (10%)

Query: 38  FSINTRALYFSRDFRNNPSGPGSQSRAEETGLGFNALYQSGFTQGTIGVGVDVIGLLGVK 97
           +S+ +R  +   DFR+ PSG G   R +E   GF    +SGFT+GT+GVG+D  G LG+K
Sbjct: 30  WSLLSRNYFLHSDFRS-PSGSGQNYR-QEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLK 87

Query: 98  LDSGKGRAGTGLFPTGSDGRSQDDYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRL 157
           LD G+G +GTGL P  SDGR++ +YS  G A+K ++ +T L+ G+     PVF + D RL
Sbjct: 88  LDGGRGHSGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRL 147

Query: 158 LPELPQGISITSNEIKGLKLEGGHFTSSVAQ-NQTYHDSL---GLT----KTDFVGGVYS 209
            PE   G  + + +    +L+ G FT+   Q N + HD     G T         G  ++
Sbjct: 148 HPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDFSGYGATTHNRAISLAGATFA 207

Query: 210 FTPEFTGSLYYAKTEDYFRKYYSNLNWTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDN 269
               F  +LY  + E+ +R+ Y NLN         ++ LD N+Y T+  G          
Sbjct: 208 PNGPFGAALYAGQLENTWRQAYLNLNLAQG-----NWRLDGNLYKTRDTGN--------- 253

Query: 270 GLPFAERTKLDNRAFSLQGAYTIGAHTFTLAAQKVTGDGDYGYGVDGGGTVFLANSIARS 329
               A    +D  A+SL   Y+ GA   ++A QKV GD  + +   GG +++LAN+I  +
Sbjct: 254 ----ASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDF--VGGDSIYLANAIKYA 307

Query: 330 DFNAEGEKSYQARYDINMATFGIPGLSFMTRYVTGSGANTATT-----------SNGKEW 378
           DFN  GE S+Q RYD+N AT G PGLS M RYV+G G + +               GK W
Sbjct: 308 DFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHW 367

Query: 379 ERDIEAKYVIQSGPAKDLSLRIRQATYRSSDGVYYGSSSIDELRLIANYPL 429
           ERDI+ KYV+QSG AKDLSL     ++R++         ID + LI  YPL
Sbjct: 368 ERDIDLKYVVQSGAAKDLSLSFSHVSHRANQA--QAGDDIDRIYLIIEYPL 416