Pairwise Alignments

Query, 432 a.a., porin from Pseudomonas simiae WCS417

Subject, 449 a.a., putative OprD family outer membrane porin from Pseudomonas putida KT2440

 Score =  252 bits (643), Expect = 2e-71
 Identities = 158/453 (34%), Positives = 232/453 (51%), Gaps = 48/453 (10%)

Query: 12  AVSAGTTQFAMASAQSDSKGFVEDSTFSINTRALYFSRDFRN-----NPSGPGSQSRAEE 66
           A+S      + A A SD +GF++ +   +  R  +FS+D+RN     NP+    QS   E
Sbjct: 10  ALSLAILLASPAFADSDDEGFIDGTRVHVLNRNFFFSQDYRNGDFTLNPNNGERQSLHRE 69

Query: 67  TGLGFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGTGLFPTG--------SDGRS 118
            G G  A  QSGFT+GT+G GVDV GL+G+KLD G G  G G+   G         DG  
Sbjct: 70  WGHGIIANLQSGFTRGTVGFGVDVQGLVGLKLDGGNGAVGNGVGVPGIVSRSGSNFDGEP 129

Query: 119 QDDYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEIKGLKLE 178
           +D Y K G A+K R  DT L+ GD   T+PV  + D RLLP+  +G    +N + GL L+
Sbjct: 130 KDSYGKVGTALKVRAFDTELRYGDVSPTSPVLHASDIRLLPQTLRGFIFNNNSLDGLSLQ 189

Query: 179 GGHFTSSVAQNQTYHDS----------LGLTKTDFVGGVYSFTPEFTGSLYYAKTEDYFR 228
           GG   SS  +N + H             G     ++GG Y F  + T  L+ ++ +D + 
Sbjct: 190 GGKLESSSDRNASNHRGDLGTVYAGRIKGANDVVYLGGDYRFNDQLTLRLHSSRLDDVWN 249

Query: 229 KYYSNLNWTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRAFSLQG 288
           + + +++    L  + S     N Y T+  G+ L               ++DN ++S+  
Sbjct: 250 QSFFSVDHVQPLGSELSLKTGLNYYRTRDSGQAL-------------AGQIDNDSWSVHA 296

Query: 289 AYTIGAHTFTLAAQKVTGDGDYGYGVDGGGTVFLANSIARSDFNAEGEKSYQARYDINMA 348
               GAH F L+  ++ GD  + Y V     + L  +   SDFN   E++++ARYD + A
Sbjct: 297 GLAAGAHGFKLSYTRIDGDTPFDY-VWNTYDLQLDAASQVSDFNNPNERAWEARYDYDFA 355

Query: 349 TFGIPGLSFMTRYVTGSGANTAT----------TSNGKEWERDIEAKYVIQSGPAKDLSL 398
             G+PGLS   RYV G+  +             T +G+ WER++  KYV+QSGPAKDLS 
Sbjct: 356 PLGVPGLSLTARYVRGTDIDGTRAGGAYSYFNGTEDGRHWERNLWLKYVLQSGPAKDLSF 415

Query: 399 RIRQATYRSSDGVYYGSSSIDELRLIANYPLNI 431
            + QAT+R   G +   S++DELRLI  YPL+I
Sbjct: 416 NLMQATHRVG-GDHVAESNVDELRLIVQYPLDI 447