Pairwise Alignments

Query, 432 a.a., porin from Pseudomonas simiae WCS417

Subject, 444 a.a., histidine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  248 bits (633), Expect = 3e-70
 Identities = 156/458 (34%), Positives = 239/458 (52%), Gaps = 51/458 (11%)

Query: 5   KWSMIALAVSAGTTQFAMASAQSDSKGFVEDSTFSINTRALYFSRDFRNNPSGPGSQSRA 64
           +++ + +A++A T  FA  + +  + GF+E S+F+++ R  YF+RD  N           
Sbjct: 6   RFTPLFIALTA-TIPFAAQADEDKADGFIEGSSFNLHFRNAYFNRDNHN-----AGVRDT 59

Query: 65  EETGLGFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGTGLFPT-----GSDGRSQ 119
            E G G  A ++SG+T G +G G+D   +LG+KLD G G AGT + P      G  G + 
Sbjct: 60  REWGQGAVARFESGYTPGVVGFGLDAHAMLGLKLDGGGGHAGTSILPEHIKDDGELGAAP 119

Query: 120 DDYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEIKGLKLEG 179
             +S  G AVK +  DT LK GD + T PV A  ++R+LP+  +G+S+T+  I GL LEG
Sbjct: 120 HSFSTAGAAVKLKAFDTELKAGDLFLTNPVIAGGETRMLPQTFRGVSLTNTSIDGLLLEG 179

Query: 180 GHFTSSVAQNQ-------TYHDSLG----LTKTDFVGGVYSFTPEFTGSLYYAKTEDYFR 228
           G  + +   NQ       TY+ SL         ++ G  +S T   T +LY A+ +D + 
Sbjct: 180 GQVSFTHPYNQSGHRRIDTYYGSLDEHDKSKHLNWAGASWSGTEHITANLYAAELKDIWN 239

Query: 229 KYYSNLNWTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRAFSLQG 288
           +YY++ ++T+ ++D  S     + Y T+  G+ L               K+DN  +S+  
Sbjct: 240 QYYADFDYTYVVNDLVSLNPGVHFYHTQDTGQAL-------------LGKIDNNTYSVHF 286

Query: 289 AYTIGAHTFTLAAQKVTGDGDYGYGVDGGGTVFLANSIARSDFNAEGEKSYQARYDINMA 348
               G H+ T A Q+V G+  + Y ++ G +V+L NS   SDFNA  E+S++ +Y  + A
Sbjct: 287 TVNAGFHSVTAAYQRVNGNTPFDY-INLGDSVYLDNSRMYSDFNAPNERSWKLQYGYDFA 345

Query: 349 TFGIPGLSFMTRYVTGSGANTATT-------------SNGKEWERDIEAKYVIQSGPAKD 395
             G+PGLS    Y  G    T  T              N   WERD++ KYV Q G  KD
Sbjct: 346 GVGVPGLSTSLSYSRGEADLTKATQDTTHYDYYREDGKNAMHWERDLDVKYVFQEGDLKD 405

Query: 396 LSLRIRQATYRSSDGV--YYGSSSIDELRLIANYPLNI 431
           LS+ +R AT+R S G      +S  DELR+I +YPLN+
Sbjct: 406 LSVLVRYATHRGSQGYASIDSNSDNDELRVIVDYPLNV 443