Pairwise Alignments

Query, 432 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., tyrosine-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  283 bits (725), Expect = 6e-81
 Identities = 174/463 (37%), Positives = 261/463 (56%), Gaps = 52/463 (11%)

Query: 4   MKWSMIALAVSAGTTQFAM-ASAQSDSKGFVEDSTFSINTRALYFSRDFRNNP-----SG 57
           +K  +   AVSA +  +A+ A A+   +GF+E S+ ++  R  YF+RD R++      SG
Sbjct: 3   IKVPLYLAAVSALSGSYAISAQAEDKPEGFIEGSSLTVLNRNFYFNRDNRDSTAPTYNSG 62

Query: 58  PGSQSRAEETGL-GFNALYQSGFTQGTIGVGVDVIGLLGVKLDSGKGRAGT----GLFPT 112
            G+ +   E       + + SGFTQGT+G GVD   ++G+KLD+G GR G      + P 
Sbjct: 63  KGNTNGYSEAWAHAIISKFNSGFTQGTVGFGVDAFAMIGLKLDTGDGRNGGRSSFDVLPV 122

Query: 113 GSDGRSQDDYSKGGGAVKFRISDTVLKVGDQYTTAPVFASDDSRLLPELPQGISITSNEI 172
            + G ++D+Y+K GGA K R+ DT++KVGD + + PV AS DSRLLPE  +G+++ +  I
Sbjct: 123 DNKGEARDEYTKVGGAAKVRLFDTIVKVGDVFPSTPVVASGDSRLLPESFRGVTVENTSI 182

Query: 173 KGLKLEGGH---FTSSVAQNQT------YHDSLGLTKTDFVGGVYSFTPEFTGSLYYAKT 223
           +GL L+GG     +  V+ N        Y   +      + GG YS    +T S+Y ++ 
Sbjct: 183 QGLTLQGGRLHAMSQPVSSNLNDNFVTFYGGPVNSPWIGYGGGDYSINDNWTVSVYASQL 242

Query: 224 EDYFRKYYSNLNWTHALSDDQSFALDFNIYDTKSDGEGLQRAYKDNGLPFAERTKLDNRA 283
           +D + +YY+  +  + LSDD +    FN Y  K+  EG +R             + DN  
Sbjct: 243 KDVWNQYYAGTSVVYPLSDDLALIGGFNYY--KAVDEGKKRL-----------GEFDNNI 289

Query: 284 FSLQGAYTIGAHTFTLAAQKVTGDGDYGYGVDGGGTVFLANSIARSDFNAEGEKSYQARY 343
           +S +     GAHT  L+ Q+  GD D+ Y +    ++F+ NSI  SDFN+  E+S+  RY
Sbjct: 290 WSAKVGVRYGAHTLALSHQRNNGDDDFDY-LRQSDSIFVDNSIQYSDFNSPKERSWMLRY 348

Query: 344 DINMATFGIPGLSFMTRYVTGSGANTATTS--------------NGKEWERDIEAKYVIQ 389
           D+N  ++GIPGL+FMTRY  GSGA+ +  +              N K WERD+E KYV+Q
Sbjct: 349 DLNFTSYGIPGLTFMTRYARGSGADYSNANQFYMRTDDNGNPLDNQKRWERDVEVKYVVQ 408

Query: 390 SGPAKDLSLRIRQATYRSSDGVYYGSSSIDELRLIANYPLNIL 432
           +GPAKDLS R+RQAT R++       S +DE R+I  YPL+IL
Sbjct: 409 TGPAKDLSFRLRQATTRAT----AFESDLDETRVIIEYPLSIL 447