Pairwise Alignments

Query, 502 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 502 a.a., Sigma-54 dependent transcriptional regulator/sensory box protein from Pseudomonas putida KT2440

 Score =  838 bits (2165), Expect = 0.0
 Identities = 423/502 (84%), Positives = 456/502 (90%)

Query: 1   MRIHVSFIDRVGITQEVLALLGGRNLNLDAVEMVPPNVYIDAPTLSADVLEELRDALFSV 60
           MRIHVSFIDRVGITQEVLALLG RNLNLDAVEMVPPNVYIDAPTLS  VLEEL DALF V
Sbjct: 1   MRIHVSFIDRVGITQEVLALLGARNLNLDAVEMVPPNVYIDAPTLSPAVLEELHDALFEV 60

Query: 61  QGVQAVKVVDILPGQRRHLQLDALLAAMTDPVLALDSAGKILLANPALIALYGREPAGES 120
            GVQ+V VVDILPGQRRHLQLDALLAAM+DPVLA+DSAG +LLANPALI L GRE AG S
Sbjct: 61  HGVQSVDVVDILPGQRRHLQLDALLAAMSDPVLAVDSAGLVLLANPALIELCGRESAGRS 120

Query: 121 ISELFNDPALLDTLLEQGFRLPLREISVNGQTLLLDATPITDAGALLTLYQPNRIGEQLS 180
           + ELF DPALL  LL+  F LP+RE+ +NG +LLLDA PIT+AG LLTLY P+R+GE+LS
Sbjct: 121 VGELFGDPALLQALLDNNFHLPMREMQLNGHSLLLDAMPITNAGGLLTLYPPSRMGERLS 180

Query: 181 ALHHDHAEGFDALLGESPVIRTLKARAQRVAALDAPLLIQGETGTGKELVARACHAISAR 240
           ALHHDHAEGFDALLGESP IRTLKARA RVAALDAPLL+ GETGTGKELVARACHA+S+R
Sbjct: 181 ALHHDHAEGFDALLGESPAIRTLKARALRVAALDAPLLVHGETGTGKELVARACHAVSSR 240

Query: 241 HSAPFLALNCAALPENLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSP 300
           H+APFLALNCAALPE+LAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSP
Sbjct: 241 HAAPFLALNCAALPESLAESELFGYAPGAFTGAQRGGKPGLMELANQGTVFLDEIGEMSP 300

Query: 301 YLQAKLLRFLNDGSFRRVGGDREVKVNVRILSATHRDLEKMVSEGTFREDLFYRLNVLNV 360
           YLQAKLLRFL+DGSFRRVGGDREVKV+VRI+SATHRDLE+MV+EG+FREDLFYRLNVLN+
Sbjct: 301 YLQAKLLRFLSDGSFRRVGGDREVKVDVRIISATHRDLERMVAEGSFREDLFYRLNVLNL 360

Query: 361 EVPPLRERGQDILLLARYFMQQACAQIQRPVCRLAPGTYPALLGNRWPGNVRQLQNVIFR 420
           EVPPLR+RGQDIL+LA +FMQQAC QIQRP CRL P T+ ALL N WPGNVRQLQNVIFR
Sbjct: 361 EVPPLRDRGQDILMLAHFFMQQACTQIQRPACRLTPSTHSALLANPWPGNVRQLQNVIFR 420

Query: 421 AAAICESSLVDIGDLDIAGTSVARQSDGEIDSLEQAVEDFERNLLETLYTSYPSTRQLAS 480
           AAAICE +LVDIGDLDIAGTSVAR  DGE+ SLEQAV DFER LL+ LY SYPSTRQLA 
Sbjct: 421 AAAICEGNLVDIGDLDIAGTSVARGQDGEVASLEQAVGDFERELLQRLYASYPSTRQLAG 480

Query: 481 RLQTSHTAIAHRLRKYGIPNKP 502
           RLQTSHTAIA RLRKYGIP KP
Sbjct: 481 RLQTSHTAIAQRLRKYGIPGKP 502