Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 646 a.a., type VI secretion protein ImpA from Pseudomonas simiae WCS417

 Score =  299 bits (766), Expect = 2e-85
 Identities = 206/647 (31%), Positives = 319/647 (49%), Gaps = 53/647 (8%)

Query: 18  PSEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGF---DDRGRGVHGLV 74
           P    + E  G E + + + ++++L S   ++DL  LL + + +G    D   R  HG+V
Sbjct: 18  PDVLLLNEMGGGEELGRLFNYELQLTSLDANIDLNQLLGKPMSVGLQLADGGERHFHGIV 77

Query: 75  YRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEF 134
            R +Q     +   YQ+TL P L  L  +S  RIFQ+ ++PQI+ QV    G     FE 
Sbjct: 78  ARCSQNIDQGQFASYQVTLRPWLWLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSD--FED 135

Query: 135 RLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGDDQTVF--VQAD 192
            LS  Y E EYCVQ+ ET   F+ RL  + GI+Y F+H    H+LV  D       V   
Sbjct: 136 ALSRPYREWEYCVQYRETSFDFVSRLMEQEGIYYFFRHEQDRHVLVLADAYGAHTTVPGY 195

Query: 193 PPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSLALESEV------TGEQ 246
              PY P      +   +  + +  + +   + L DYDF++PS +++         T   
Sbjct: 196 ASIPYYPKDEQQRERDHMHNWHLAHEVQPGSMELNDYDFQRPSASIDVRSAMPRPHTAGD 255

Query: 247 LPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLKLAGHPRE 306
            P  +   YPG +     G++ A+  +E  ++ +     +G+   LGSG    L G  R+
Sbjct: 256 YPLYD---YPGTYVQSEDGEHYARTRIEALQTLHEQIEFNGNARGLGSGHLFSLTGFSRQ 312

Query: 307 DWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPWDAIFRPPMPEQPRP 366
           D N  +L+      G +  +++ES+ E  GG     + +  +       FRP +    RP
Sbjct: 313 DQNREYLIV-----GCRYYIVQESL-ESGGGSGSAQFESSLTCIDAQQSFRP-LANTHRP 365

Query: 367 TIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWLRVASGWAHDRYGSV 426
            + G Q A+V GP   EI  D+YGRVKV   WDR  + N++SSCW+RV+  WA   +GS+
Sbjct: 366 IVKGPQTALVVGPKGEEIWTDQYGRVKVHFYWDRHDQSNENSSCWIRVSQSWAGKNWGSM 425

Query: 427 LIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSVFRSQSSPGG--GGY 484
            IPR+G EV+V F+ GD D P++ G + NA   VP DLP + T+S  +S+SS GG    +
Sbjct: 426 QIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGSPANF 485

Query: 485 NELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVD-----GESHHELQGEELRITHG-NR 538
           NE+R+ED+KG E++Y+ A+R+       D+ V VD     G   ++  G    +T G NR
Sbjct: 486 NEIRMEDKKGLEQLYIHAERN------QDIVVEVDESHSVGHDRNKSIGHNETVTIGNNR 539

Query: 539 LTDLKQDDHLMVGGSRQ--------VRAGQTIQIGAGQSVVIEGGATVTIQAGGQSITLC 590
           L  +KQ+D L VG  +         +  G+ +++  G+S ++E  A+  I   G  I+  
Sbjct: 540 LRIVKQEDILSVGQKKTDSISQSYVIEVGENLRLVCGES-ILELNASGQINLTGVQISFY 598

Query: 591 AGG---IFSSVPIQLGSAPAATAAPLTPGLK----ETVLAVIPAPLS 630
           A G     +   + L +     A P   G K      + A  PAP S
Sbjct: 599 ASGDAEFNTGGVLHLNNGGGPGATPDGQGQKGAIDANIKAAFPAPKS 645