Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 839 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  245 bits (625), Expect = 7e-69
 Identities = 180/531 (33%), Positives = 251/531 (47%), Gaps = 43/531 (8%)

Query: 28  GIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGFDDRGRGVH---GLVYRMAQGDSGR 84
           G E++SQ   FD+EL+     +D ++LL +   +       G     G+V R        
Sbjct: 12  GREALSQANAFDVELLGNSNTIDAKALLGKAATVSMQTGHGGTRHLAGIVTRFGLAREDA 71

Query: 85  RLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEFRLSGTYPERE 144
           R   Y M L P           RIFQ + VP+IVA+VLE  G     FE +LS  Y    
Sbjct: 72  RHAFYAMRLRPWFWLATKRHDYRIFQDRGVPEIVAEVLERYG---HPFEQKLSRNYRNWT 128

Query: 145 YCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGDDQTVFVQADPPTP------YT 198
           YCVQ+GE+D  F+ RLC   GI+Y+ +H +  H+LVF DD      +  P P      Y 
Sbjct: 129 YCVQYGESDFDFVSRLCEHEGIYYYVRHEATQHVLVFADD---IANSHSPLPGGETVRYH 185

Query: 199 PG--SGMVADTPVIKRFAVQVQARTTGVNLR-------DYDFRKPSLALESEVTGEQLPP 249
           P   SGM       +R    + A  TG  LR       DYDF KP   L+S     Q+PP
Sbjct: 186 PHEQSGMTGGEEPAER----IYAWETGEELRSGRYGSDDYDFEKPKADLKSR---RQMPP 238

Query: 250 ------LEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLKLAGH 303
                  E   +PGH+   + G   AQ   E   S    A G  +  +L  G  L+LAGH
Sbjct: 239 GHDHDDHEVFEWPGHYLLNSDGDAYAQTRNEELLSARNQAHGRSNLRSLAPGHTLRLAGH 298

Query: 304 PREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPWDAIFRPPMPEQ 363
           P E  N  +L+  V +   +     E   + +GG  +   R  F A P    +R P    
Sbjct: 299 PCEAQNRQYLLLGVAYHLQENLRATEGTGDTSGGSIQ---RFAFDAQPTSMAWRAPRTT- 354

Query: 364 PRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWLRVASGWAHDRY 423
           P+P   G Q AVV GPA  EI  D++GR+KV+  WDR G  ++++SCWLRV+ GWA   +
Sbjct: 355 PKPRTGGPQTAVVVGPAGHEIWTDQHGRIKVRFRWDRLGRADENASCWLRVSHGWAGGHF 414

Query: 424 GSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSVFRSQSSPGGGG 483
           G+  +PR+G EV+V F++GD D P+V+G   NA       LP +   +  RS+   G   
Sbjct: 415 GTAALPRIGQEVVVDFLDGDPDHPIVVGRFHNADAMPAWQLPRETHLTSMRSRELGGSLR 474

Query: 484 YNELRIEDRKGAEEIYLRAQRDWTQHVL-HDLRV-NVDGESHHELQGEELR 532
            N L ++D  G  +  L++    +   L H  R+ +  G      QG ELR
Sbjct: 475 GNHLVLDDSAGKVQAQLKSDHQCSSLSLGHIGRIEDTAGRKDDRGQGFELR 525