Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1057 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  273 bits (699), Expect = 2e-77
 Identities = 192/570 (33%), Positives = 271/570 (47%), Gaps = 41/570 (7%)

Query: 16  GEPSEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHR----QVYLGFDDRGRG-- 69
           GE  +F+    +G E IS  +   + L+S+ P++    +L      +V L  +  G G  
Sbjct: 12  GERLKFR--SMTGQERISALFEHRVRLISDMPNIQPRRMLGEDMSIEVNLATELGGAGKR 69

Query: 70  -VHGLVYRMAQ-GDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGI 127
            + G V R A  G     +  Y+ TL P L Y    S  +IFQ KT PQI+ +VL   G 
Sbjct: 70  FLSGQVTRFAYVGKDDGDMCVYEATLRPWLWYATRRSDFKIFQFKTAPQILQEVLAPYGF 129

Query: 128 QRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVF---GDD 184
             D    RLSG Y   +YCVQ+ E+D  F+ RL  + GI+Y F H+   H LV     D 
Sbjct: 130 AIDA---RLSGNYRTWDYCVQYSESDFNFVSRLMEQEGIYYFFSHAQGSHQLVLCDGADS 186

Query: 185 QTVFVQADPPTPYTPG--SGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSLALES-- 240
            T         PY  G  +  + +   I  ++      +      DYDFRKP+  +++  
Sbjct: 187 HTPVPSGPVKVPYHAGVLAAQILEQDFIDSWSHSEDIASGNFAADDYDFRKPNAEIDTVR 246

Query: 241 -EVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLK 299
            +  G      E   +PG + +   G+  A+  LE+      +    G+   +  G   +
Sbjct: 247 QQPAGHSRDDFEIYDWPGGYTELGDGENYARLRLEQLAGRRELVSAEGNLRHMAPGYLFE 306

Query: 300 LAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGG--------DFRQGYRNEFSATP 351
           LA HP  + N  +L+  VT++       +E+   VAG              YR  F   P
Sbjct: 307 LARHPNAEDNRRYLIEAVTYD------FQENALRVAGAADAAYSESTSSTSYRQTFEVLP 360

Query: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411
             A FRP     PRP   G Q AVV GPA  EIH DEYGR+KVQ  WDR G  +++SSCW
Sbjct: 361 DSAPFRPARVT-PRPRTTGPQTAVVVGPAGEEIHTDEYGRIKVQFHWDRYGRRDENSSCW 419

Query: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471
           +RV+  WA   YG++ IPR+G EV+V F+NGD D P+V GC+ NAA   P +LP  KT++
Sbjct: 420 IRVSQTWAGSNYGAMHIPRIGQEVIVDFLNGDPDYPIVTGCVYNAAQMPPWELPRHKTQT 479

Query: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGEEL 531
            F++  S GGGG + LR ED +G E I L      T   LH   +   G       G EL
Sbjct: 480 GFQTNWSKGGGGKHMLRFEDSRGTEHIELSTDHGNTH--LHMGYLMNQGSGVQRSYGFEL 537

Query: 532 RITHGNRLTDLKQDDHLMVGGSRQVRAGQT 561
           R    N    ++ D  L++    Q  A +T
Sbjct: 538 RT---NEWGSIRADKGLLLTTYTQDYAQRT 564



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 562 IQIGAGQSVVIEGGATVTIQAGGQSITLCAGGIFSSV 598
           I + +GQSV +   + +T+  G Q   L  GG+ + V
Sbjct: 683 IVLSSGQSVSVRATSAMTLTTGAQLTQLVTGGMLTQV 719



 Score = 26.2 bits (56), Expect = 0.008
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 548 LMVGGSRQVRA--GQTIQIGAGQSVVIEGGATVTIQAGGQSITLCAGGIFSSVPIQLGSA 605
           L  G S  VRA    T+  GA  + ++ GG    +  GGQ   +  G I S       + 
Sbjct: 685 LSSGQSVSVRATSAMTLTTGAQLTQLVTGGMLTQVSEGGQVNVVSGGDIVSHASAGAVNL 744

Query: 606 PAATAAPLT 614
            + T A +T
Sbjct: 745 VSKTDASMT 753