Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 780 a.a., VgrG protein from Variovorax sp. SCN45

 Score =  269 bits (687), Expect = 4e-76
 Identities = 188/595 (31%), Positives = 296/595 (49%), Gaps = 32/595 (5%)

Query: 20  EFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGFDDRG--RGVHGLVYRM 77
           + K     G E +SQ + F++++V    +++L+ LL   + L   D G  R ++G V R 
Sbjct: 15  QLKFRAMRGQEGLSQLFEFEVDMVGTSFNIELKQLLGTSLTLELADDGGPRFLNGTVVRF 74

Query: 78  A----QGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFE 133
                  ++GR    Y+  + P L YL  ++  RIFQ+K+VP+++ +VL   G +   FE
Sbjct: 75  ELVGRANETGRHYI-YRALVQPWLWYLTRTTDCRIFQNKSVPEVLDEVLGKYGFE---FE 130

Query: 134 FRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGDDQTVF--VQA 191
            RL+ +Y   E CVQ+ E+D AF+ RL    GI YHF+H +  HLLV  DD   +  +  
Sbjct: 131 KRLTASYRPWENCVQYQESDFAFVSRLMEHEGIAYHFEHGNGTHLLVLSDDTGGYSPLPG 190

Query: 192 DPPTPYTPGSGMV-ADTPVIKRFAVQVQARTTGVNLRDYDFRKPSLALES---EVTGEQL 247
                Y P   ++ A  P I ++ V  Q  +  V L D+DF+K   +L+S   +  G   
Sbjct: 191 HATIAYRPRDRVLNAMEPCIDQWRVSEQITSGRVMLDDFDFKKSRASLQSVQQDPKGHDH 250

Query: 248 PPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLKLAGHPRED 307
              E   + G +++   G   A+  L+  +  + +ARG  +   +  G   ++   PRE 
Sbjct: 251 STYEVYEWLGGYSEHQQGDAYAKIRLQELQCAHELARGHTNVVGMAPGYLFQMTHCPREA 310

Query: 308 WNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPWDAIFRPPMPEQPRPT 367
            N  +LVT   ++  +P+         +GG        +F+  P    +RP     PRP 
Sbjct: 311 DNREYLVTETRYDLQEPEYS-------SGGSSESVCEFDFTVLPSSVAYRPAR-NTPRPR 362

Query: 368 IAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWLRVASGWAHDRYGSVL 427
             G Q A V GP   EI  D +GRVK+Q  WDR G+ +++SSCW+RV+S WA   +G++ 
Sbjct: 363 TNGPQTATVVGP--EEIWTDRFGRVKLQFRWDRYGQGDENSSCWVRVSSSWAGANFGTMH 420

Query: 428 IPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSVFRSQSSPGGGG--YN 485
           +PRVG EV+V F+ G+ D P++ G + N+    P +LPA+ T S   ++SS GG     N
Sbjct: 421 MPRVGQEVIVDFIGGEPDRPIITGRVYNSDQMPPWELPANATASGILTRSSSGGAANQAN 480

Query: 486 ELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGEELRITHGNRLTDLKQD 545
            LR EDR G+E+I+L A+R+    V  D     DG     ++G E          D+   
Sbjct: 481 MLRFEDRTGSEQIWLHAERNLDVEVEADETHTTDGTRTTLIKGHESATYQDGETRDITAG 540

Query: 546 --DHLMVGGSRQVRAGQTIQIGAGQSVVIEGGATVTIQAGGQSITLCAGGIFSSV 598
             + +  G +R V  G T  +  G +  I GG T  +  G Q      GG+ S++
Sbjct: 541 ARETITGGDTRDVTGGFTETVSGGVNQTISGGKTRMLSGGLQD--TITGGVNSAI 593