Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 618 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  261 bits (667), Expect = 7e-74
 Identities = 199/615 (32%), Positives = 300/615 (48%), Gaps = 51/615 (8%)

Query: 1   MFAPANQSAFTLTLDGEPS--EFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQ 58
           M AP N+  F L +  + +  EF +  FSG E +S+ Y FD+ L+S+Q D+ L+SL+  Q
Sbjct: 8   MLAPQNRRLFKLNILTQTANDEFLLEHFSGTEELSKLYEFDLALLSQQSDVKLKSLIGSQ 67

Query: 59  VYLGFDDRG---RGVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVP 115
             +  +      R ++G V R +   S     RY   L P L  L      RIFQ K+V 
Sbjct: 68  ATVEIELSNGSFRHINGYVQRFSTQGSDGGYVRYAAVLGPWLWMLTCRFDTRIFQEKSVQ 127

Query: 116 QIVAQVLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSA 175
            +V++V  G G    ++EFR+S       Y  Q+ E+D  F+QRL    G+ Y+F+H++ 
Sbjct: 128 AVVSEVFAGFGTLA-KYEFRVSKPLKSHSYITQYRESDFNFVQRLLESEGLFYYFEHTAD 186

Query: 176 GHLLVFGDDQTVFVQADPPTPYTPGSGMVADTP-VIKRFAVQVQARTTGVNLRDYDFRKP 234
            HL+V  DD +  +           S  V +T   I ++    Q ++  + +R +D+R+P
Sbjct: 187 SHLMVITDDSSTLLPLPEQPQIRYHSASVTETADSITQWQSTRQLQSGQIAVRTFDYRQP 246

Query: 235 S----LALESEVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDY-----RVARG 285
                + ++S      +   E   +PG +    HG Y     + R+R +      +   G
Sbjct: 247 RNFLPVTMQSLNQQGDVDRFEIYDFPGQYT---HGSYEDGEAIVRNRIEALELMGKTFYG 303

Query: 286 SGDEPALGSGRFLKLAGHPREDW----NDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQ 341
             +  A+  G   +L  H   D     N  +L+  V H G    +          GD + 
Sbjct: 304 ESNCRAMKPGYTFELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMT---------GD-QA 353

Query: 342 GYRNEFSATPWDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRD 401
           GY N F        +RP +  + +P I G Q A+V GP   EI  DE GRVK+Q  WDR 
Sbjct: 354 GYVNRFVCVRKKIAYRPQLNTR-KPLINGPQTAIVVGPPGEEIFTDELGRVKLQFHWDRQ 412

Query: 402 GEHNDHSSCWLRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVP 461
           G+ ND SSCW+RVA   A   +GS+ IPRVG EV+V F++G+ D PL+MG L N+    P
Sbjct: 413 GQFNDQSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPP 472

Query: 462 LDLPADKTRSVFRSQSSPGGGG-YNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDG 520
             LPA+KT+S F ++S  G GG  N  R ED+ GAE+I + A+R+       D  + +D 
Sbjct: 473 WSLPANKTQSGFLTRSMKGDGGTANFFRFEDKAGAEQIIMHAERNM------DTEIELD- 525

Query: 521 ESHHELQGEELRITHGNRLTDLKQDDHLMVGGSRQVRAGQ-TIQIGAGQSVVIEGGATVT 579
           E+H    G    IT G   T+  + D ++     QV  G  T+Q+   Q + +     + 
Sbjct: 526 ETHD--VGNNRSITVGGTHTETVKKDTVV-----QVTEGSYTLQVD-NQFIQVAAKQHII 577

Query: 580 IQAGGQSITLCAGGI 594
           +Q G  SITL   GI
Sbjct: 578 LQVGDSSITLTPEGI 592