Pairwise Alignments

Query, 658 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  336 bits (862), Expect = 2e-96
 Identities = 215/575 (37%), Positives = 288/575 (50%), Gaps = 39/575 (6%)

Query: 21  FKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVYLGFDDRGRGV---HGLVYRM 77
           F+V  F   E IS P+  +++L+S + D+D   LL + V     D  R V   HGLV   
Sbjct: 20  FEVVSFELREGISAPFELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSF 79

Query: 78  AQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQVLEGQGIQRDRFEFRLS 137
           +QG+SG   T Y   + PQLA     S+ RIFQHKTVPQI+  +L+ QGI  D++E R S
Sbjct: 80  SQGESGFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILELMLKRQGI--DQYELRAS 137

Query: 138 GTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLVFGD-------------- 183
             +  RE+CVQ GETDLAFI RL AE G  Y F HS   H L+  D              
Sbjct: 138 MDHQVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIK 197

Query: 184 ----DQTVFVQADPPTP----YTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPS 235
               D+      +P  P    Y   SG     P ++R     Q RT     RD+ F  P+
Sbjct: 198 ADHEDEGFGDDDEPVGPDSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPA 257

Query: 236 LALESEVTG----EQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPA 291
              E    G     Q    E   YPG +   A GK   +  +   R D R+A   GD+  
Sbjct: 258 YRQEHRAAGPFLEHQSKDYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDDVR 317

Query: 292 LGSGRFLKLAGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATP 351
           L  G    L  HPRED N  W V+ V HEG QP  L+E   E AG D    Y  +    P
Sbjct: 318 LQPGLSFTLTDHPREDLNVHWRVSTVHHEGSQPTSLQE---EAAGADQGTRYEQKAVLVP 374

Query: 352 WDAIFRPPMPEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCW 411
               +RP     P+P + G   A V GP   EI+CDE+GRVKV   WDR+ ++N+ SSCW
Sbjct: 375 GRTEWRPA--PLPKPRVDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCW 432

Query: 412 LRVASGWAHDRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRS 471
           LRV+ GWA   +GS+ IPR+G +V++ +VNGD D P++ G         P DLP  KTR 
Sbjct: 433 LRVSQGWAGGSWGSMAIPRIGQDVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRM 492

Query: 472 VFRSQSSPGGGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGEEL 531
             +SQ+   G G+NELR ED  G EE+++ AQRD    V HD    V  +   ++  +E 
Sbjct: 493 TIKSQTHK-GDGFNELRFEDELGQEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDES 551

Query: 532 RITHGNRLTDLKQDDHLMVGGSRQVRAGQ--TIQI 564
            +   +R   +  D+ + +G    +  G+  TI+I
Sbjct: 552 ILIGHDRTETVGNDERITIGQDAALDIGRNHTIRI 586