Pairwise Alignments

Query, 292 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  122 bits (307), Expect = 5e-33
 Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 16/218 (7%)

Query: 72  ILWGLVNTIIMSVLAMALGVVIGVITAIMRMSANPILRYVAIT-YTWLFRGTPLILQLLL 130
           +L G + T+ ++  A+ALG V+G++  I R++      Y A T Y    RGTPL++QL +
Sbjct: 15  LLRGALVTVEITACALALGCVLGLLVGIGRLNPKRRWIYGACTAYVAAIRGTPLLVQLFI 74

Query: 131 WFNLALIFPVIAIPGLFSIDTVDLMTP-FVAALLGLSINQGAYTAEVVRAGLLSVDTGQY 189
            F              F +    ++ P F+  +LGL +  GAY +E+VR  + S+D GQ 
Sbjct: 75  LF--------------FGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDKGQT 120

Query: 190 EAAKSIGMPSLQALRRVILPQAMRVIIPPVGNEFISMVKMTSLASVIQYSELLHNAQNIY 249
            AA+S+GM    A+R+++LPQA+  +IPP+GNEFI+++K ++L S++   +++H  Q I 
Sbjct: 121 MAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQKII 180

Query: 250 YANARVMELLIVAGIWYLAVVTVLSFGQSRLERRFARG 287
             + R +E+ +   + Y  +   ++      E++  +G
Sbjct: 181 SVSYRSLEVYLAIAVVYFVLTGTMTLILRHFEQKLRQG 218