Pairwise Alignments

Query, 261 a.a., ABC transporter for L-Arginine, substrate-binding component (from data) from Pseudomonas simiae WCS417

Subject, 258 a.a., Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein from Pseudomonas fluorescens GW456-L13

 Score =  304 bits (779), Expect = 1e-87
 Identities = 154/258 (59%), Positives = 186/258 (72%), Gaps = 2/258 (0%)

Query: 1   MKKLVLLGALALSVLSMQA-FAEGKPLKIGIEAAYPPFASKAPDGSIVGFDYDIGNALCE 59
           MKK  L+  LALS+L+  + FA  K L+IGIEAAYPPFASK   G IVGFDYDIGNALC 
Sbjct: 1   MKKFPLITGLALSLLACSSVFAAEKTLRIGIEAAYPPFASKTDKGEIVGFDYDIGNALCA 60

Query: 60  EMKVKCTWVEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTNRYYLTPARLVLKEG 119
           +MK KC WVE EFDGLIP+LKV+KID  LSSM+I +DRKKSVDFT++YY T +RLV+K+G
Sbjct: 61  QMKAKCVWVEGEFDGLIPSLKVKKIDMALSSMTINEDRKKSVDFTHKYYFTSSRLVMKDG 120

Query: 120 TAVSDSLDELKGKKIGVQRGSIHDRFAKEVLAPKGATIVPYSSQNEIYLDVEAGRLDGTV 179
             V D    LKGK +GVQR +  DR+A EV  PKG  +  YS+  EIY+D+ AGRLD   
Sbjct: 121 AVVDDQYASLKGKTVGVQRATTTDRYASEVFEPKGINVKRYSNNEEIYMDLAAGRLDAIF 180

Query: 180 ADATLLQEGFLDTPAGKGYAFTGPAFTDAKYFGDGIGIAVRKGDKENLDRINAAIAAIRA 239
           AD   L + FL  P GKGYAF GP   D KY G+G GIAVRKG+ E +  +N AI  IRA
Sbjct: 181 ADTIPLND-FLSMPRGKGYAFVGPELKDPKYVGEGAGIAVRKGNTELVSELNTAIDGIRA 239

Query: 240 NGKYKEIEKKYFNFDIYG 257
           +G+Y++I +KYF  DIYG
Sbjct: 240 SGEYQKISEKYFKSDIYG 257