Pairwise Alignments

Query, 232 a.a., ABC transporter for L-Arginine, permease component 2 (from data) from Pseudomonas simiae WCS417

Subject, 249 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  124 bits (312), Expect = 1e-33
 Identities = 62/209 (29%), Positives = 117/209 (55%), Gaps = 9/209 (4%)

Query: 4   DYNVIWEAMPLYLGGLLTTLKLLAISLFFGLLAALPLGLMRVSKQPIVNGAAWLYTYVIR 63
           D+  +    P+++ G   TLK+ A+++  G+     +   + SK  +++ A  +Y  ++R
Sbjct: 6   DFAPLASYWPVFINGAWLTLKMTALAVVIGVAVGTLVAFAKRSKIRLLSRACTIYIEIVR 65

Query: 64  GTPMLVQLFLIYYGLAQFEAVRESFLWPLLSSATFCACLAFAINTSAYTAEIIAGSLKAT 123
            TP LVQ+FL+Y+GLA F     +F           A LA  IN +AY AEII   L++ 
Sbjct: 66  NTPFLVQIFLLYFGLASFGVRMPTFA---------AAVLAMVINIAAYAAEIIRAGLESV 116

Query: 124 PNGEIEAAKAMGMSRYKLYRRILLPSALRRALPQYSNEVIMMLQTTSLASIVTLIDITGA 183
           P G+IEAA+ +G+S++++   ++L  ++ +  P  +++ ++M+Q +++AS ++  ++T  
Sbjct: 117 PRGQIEAAECLGLSKWRIGWHVMLQPSIEKVYPALTSQFLLMMQASAMASQISAEELTAI 176

Query: 184 ARTVNAQFYLPFEAYITAGVFYLCLTFIL 212
           A TV +  +   E YI     YL L+  +
Sbjct: 177 ANTVQSDTFRSLETYIVVAALYLVLSLFI 205