Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  251 bits (640), Expect = 9e-71
 Identities = 161/453 (35%), Positives = 262/453 (57%), Gaps = 17/453 (3%)

Query: 105 LIESSEERAAYDDYVRLLGQYHQIEERMKSLSRANQVE--ELRSLLNNE-------LLSN 155
           LI S+    AY      LG+          L+  NQ++  E+R  ++ E       L   
Sbjct: 261 LISSNGRLVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDKEHGHIELFLPFT 320

Query: 156 SEQVNAVLTRLLDINNKMALATNK----DAEDQYNM-AFNMVVSLLVIATLLTLLFAWLL 210
             Q +A  T +L +     +A ++    D E Q     F M ++ L+IA +  LL  WL+
Sbjct: 321 IGQADARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGI-GLLVIWLV 379

Query: 211 TRSITLPIAQALEAAEEVA--EGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAG 268
              I  P+ Q +    ++A  EG+LTR +  D +DE G +         KL+  + ++  
Sbjct: 380 GHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGFNTFLIKLQGMITQVVS 439

Query: 269 SATQLASAAEELNAVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASRN 328
           S  +++ ++E    +   + +G+ +Q  EI+Q ATAV+EMT+  ++VARNA   ++A+ +
Sbjct: 440 SVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQAAQAASH 499

Query: 329 ATTSAGDGRDLVQETVSAIERMSGDVQATATLIGDLANESRDIGKVLDVIRGLADQTNLL 388
           A  +A  G  +V++T ++I  ++ ++    +++  LA +S +I  +L  IRG+A+QTNLL
Sbjct: 500 ADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGIAEQTNLL 559

Query: 389 ALNAAIEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQAGTEHAVDSMRNS 448
           ALNAAIEAARAGE GRGFAVVADEVR LA +TQ++T EI+ MI  +Q GT   V  M +S
Sbjct: 560 ALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDVVRVMEDS 619

Query: 449 TERAESTLNIAKGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLS 508
             R + ++  A  A  +L+TI  A+  IN+ N  IASAAEEQ+ VA +++RN++NI  ++
Sbjct: 620 QSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNVINIGQVA 679

Query: 509 VQSATGASQTSAASSELSRLAVDLNGMVGRFRL 541
            + A GA ++SAAS++L++LA     ++ +F++
Sbjct: 680 NEVAGGADESSAASADLTKLAEQQRRLINQFKV 712



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 61/276 (22%), Positives = 106/276 (38%), Gaps = 36/276 (13%)

Query: 72  LLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESS-------EERAAYDDYVRLLGQ 124
           ++T     VQ+ +  +    +  IRT QG++++++E         E  A   D  R   Q
Sbjct: 433 MITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQ 492

Query: 125 YHQIEE-------------RMKSLSRANQVEELRSLLN--NELLSNSEQVNAVLTRLLDI 169
             Q                R  S S     EE+   ++    L  +SE +NA+LT +  I
Sbjct: 493 AAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGI 552

Query: 170 ---NNKMALATNKDAEDQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIAQALEAAE 226
               N +AL    +A           V    +  L         T  I   I Q  +   
Sbjct: 553 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQK--TQKATEEIQTMIQQLQQGTR 610

Query: 227 EVA---EGNLTRPIKVDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAV 283
           +V    E + +R      +DE+ +  A  A+  + +   +  I    TQ+ASAAEE +AV
Sbjct: 611 DVVRVMEDSQSR------TDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAV 664

Query: 284 TDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNA 319
            ++  R +        + A   +E ++A  ++ + A
Sbjct: 665 AEDINRNVINIGQVANEVAGGADESSAASADLTKLA 700