Pairwise Alignments

Query, 541 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  348 bits (893), Expect = e-100
 Identities = 220/543 (40%), Positives = 327/543 (60%), Gaps = 8/543 (1%)

Query: 3   LRNMNIAPRAFLGFAFIGALMLFLGVFALNQMSKIRGATEDITMSSVPSIRALDEFTQLT 62
           ++ +  A R  +GFA     ++ L  +AL+ ++ ++  +E I     P I  +       
Sbjct: 1   MKQLTTAQRIVIGFAIAPLALVGLVFYALHDLATLKQQSEQIVQQDWPKIAPIMVIATGV 60

Query: 63  LRLRVLSYRLLTNREPEVQQKTLEAFEVRNQQIRTAQGIYEKLIESSEERAAYDDYVRLL 122
                 +  LL +++    Q+  EA     Q+I  A    E L++++E +AAY       
Sbjct: 61  RDNGRNTRDLLIDQD---NQQAQEAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHR 117

Query: 123 GQYHQIEERMKSLSRANQVEELRSLLNNELLSNSEQVNAVLTRLLDINNKMALATNKDAE 182
             Y     ++++L +    E+  + L  +++     V   L  L+ +  ++     + A+
Sbjct: 118 EAYVAAFTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAEREQAAQ 177

Query: 183 DQYNMAFNMVVSLLVIATLLTLLFAWLLTRSITLPIA----QALEAAEEVAEGNLTRPIK 238
             Y+ A   ++ L ++   L +  A ++TRS+  P+     +A      +A+G+LT  + 
Sbjct: 178 VLYDEARRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDLTIVVP 237

Query: 239 VDGSDEAGRLLAAMAKMQDKLRDTLQRIAGSATQLASAAEELNAVTDESARGLTQQNNEI 298
           V  S E G ++  + +MQ  L   ++ IA S   +AS++EEL+AV+ +++  L  Q  EI
Sbjct: 238 VGNSAE-GSVMRNLHQMQQNLNQMVRHIATSVDGVASSSEELSAVSSQTSSSLQSQGQEI 296

Query: 299 EQAATAVNEMTSAVEEVARNAVSTSEASRNATTSAGDGRDLVQETVSAIERMSGDVQATA 358
           EQAATAVNEMT+AV+EVARNAVSTSEASR +  +A  GR  VQETV++I  ++  V  T+
Sbjct: 297 EQAATAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLATGVVETS 356

Query: 359 TLIGDLANESRDIGKVLDVIRGLADQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAH 418
             I  LA   +DI  VL+VIR +ADQTNLLALNAAIEAARAG+AGRGFAVVADEVRALAH
Sbjct: 357 ERIQQLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAH 416

Query: 419 RTQQSTSEIERMIGSIQAGTEHAVDSMRNSTERAESTLNIAKGAGMSLDTINTAIVEINE 478
           RTQ ST EIE+MIG+I+  TEHAV +M +S+ER ++TL++A+ +G +LD I  +I +INE
Sbjct: 417 RTQASTQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITRSISQINE 476

Query: 479 RNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSATGASQTSAASSELSRLAVDLNGMVGR 538
           RN++IASA EEQA VAREVDRNLV IR+LS Q   GA  T  A  +L+ +A  L+  V R
Sbjct: 477 RNMMIASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGALHQTVAR 536

Query: 539 FRL 541
           F++
Sbjct: 537 FKV 539