Pairwise Alignments

Query, 332 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 338 a.a., AraC-type DNA-binding domain-containing proteins from Variovorax sp. SCN45

 Score =  164 bits (415), Expect = 3e-45
 Identities = 111/339 (32%), Positives = 172/339 (50%), Gaps = 10/339 (2%)

Query: 1   MRER-TIASHYARAALGGARRA--GYDYSGLLQQVGITPELLTEPRARIAPEQFTRLLQM 57
           M+ER T+   + R  L GARR     D   +  Q GI+P LL +  AR+  EQF R+ + 
Sbjct: 1   MQERATVPVSFLRDMLTGARRQLRAQDIDAIATQAGISPLLLRQGAARVTREQFVRMYEG 60

Query: 58  LWLALDDEYLGFADGPSKRGTFAMMCHALIHCRTLEKALERGLLFYSLFPQGPRWQLTRE 117
           + L + DE LG    P + G    +  +L+   +L  A+ R   F++L     R ++ R 
Sbjct: 61  VALFMGDEMLGLWSRPIRAGALKYLGLSLLDAPSLMVAMYRFTRFWNLLLDDYRLRMARA 120

Query: 118 GEMARLS----LDDSQLWDPEHFLSECLLVIWHRLGSWLIGQRIRLHQATFSYPQPAHAS 173
             +A ++    LD +    P  F  E ++ + H + SWL+G+++ + +  F++ +PA   
Sbjct: 121 NGVATVTIAPRLDGTT---PTPFGHELMVKLIHGVASWLVGRQLPVLEVGFAFRRPARFD 177

Query: 174 EYDLLFPCAQVFGAPNSSLVFPARYLNLPLLQDERTLKHFLERSPADLLSRPDEGDSLSS 233
           EY  LFP    FG   SS+ F    L     +    L  F+ R+P D +    + D+  S
Sbjct: 178 EYANLFPGPVRFGQAASSVSFSEAVLRQTFRRTRGELLDFVRRAPDDWIFVTFDHDTTRS 237

Query: 234 QLRRLLSRDRSPWPDLEAVAQHLHISPQTLRRHLREEGTSFQALKDELRRDIAIYHLGRA 293
            +R  ++   +    L   A  LH+S + L R L  EGTSF+A+K+E+RRD+AI  L + 
Sbjct: 238 SVRDFVAARLATGVTLGDAATSLHMSERALSRKLASEGTSFRAVKEEVRRDVAIQRLVKT 297

Query: 294 DLSLQEIAEQLGFSEPSAFHRAFKKWTGLTPGAYRAQES 332
              +  IA  +GF    AFHRAF+ WTG TP  YR + S
Sbjct: 298 REPIDLIAASVGFDNTPAFHRAFRTWTGSTPRGYRLRAS 336