Pairwise Alignments

Query, 332 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 341 a.a., transcriptional regulator, AraC family from Pseudomonas putida KT2440

 Score =  181 bits (458), Expect = 3e-50
 Identities = 123/328 (37%), Positives = 177/328 (53%), Gaps = 8/328 (2%)

Query: 5   TIASHYARAALGGARRAGYDYSGLLQQVGITPELLTEPRARIAPEQFTRLLQMLWLALDD 64
           T +    R AL GA   G D + +L    I P LL +  AR+    F+RL   L   LDD
Sbjct: 9   TTSISLVRDALQGAELRGLDVATVLSHAHIDPRLLDQRYARVPAGTFSRLWIALADLLDD 68

Query: 65  EYLGFADGPSKRGTFAMMCHALIHCRTLEKALERGLLFYSLFPQGPRWQLTREGEMARLS 124
           E+      P +RG+F +M    + C T+ +AL+R L F           +  EGE A + 
Sbjct: 69  EFFAADSHPLRRGSFKLMAQLALGCDTIGQALKRILAFLRTALDDIYGSVECEGEHAAII 128

Query: 125 LDD-SQLWDPEHFLSECLLVIWHRLGSWLIGQRIRLHQATFSYPQPAHASEYDLLFPCAQ 183
           + D  +L     F     LV+ H L  WL  +RI + + +   PQP   S+Y + F C +
Sbjct: 129 IHDHGEL--RRVFCYGAWLVLVHGLLCWLCDRRIPIVKLSMRPPQPVDDSDYRMRF-CEE 185

Query: 184 V-FGAPNSSLVFPARYLNLPLLQDERTLKHFLERSPADLLSRPDEGDSLSSQLRRLLSRD 242
           + + A  +S VF   +L   + Q   +L  FL+ +P++ L +    DS S  +RR L   
Sbjct: 186 IEWRADRTSAVFEKSFLAYKVCQTPVSLPAFLKGTPSNFLVKYRNDDSTSIMIRRRLKL- 244

Query: 243 RSP--WPDLEAVAQHLHISPQTLRRHLREEGTSFQALKDELRRDIAIYHLGRADLSLQEI 300
            SP  WP+L+ +A+ L +S  TL+R L  EG ++Q LKD LRRDI+I  L RA +++  +
Sbjct: 245 LSPHTWPELDELARDLSMSSSTLQRRLYAEGFTYQRLKDNLRRDISISLLCRAGMTVDGV 304

Query: 301 AEQLGFSEPSAFHRAFKKWTGLTPGAYR 328
           A ++GF E SAFHRAFKKWTG+TPGAYR
Sbjct: 305 ASEVGFIETSAFHRAFKKWTGITPGAYR 332