Pairwise Alignments

Query, 1048 a.a., ribonuclease E from Pseudomonas simiae WCS417

Subject, 908 a.a., Ribonuclease E (EC 3.1.26.12) from Sphingobium sp. HT1-2

 Score =  421 bits (1081), Expect = e-121
 Identities = 287/764 (37%), Positives = 395/764 (51%), Gaps = 59/764 (7%)

Query: 82  RVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGE 141
           R  I+DV+   Q ++VQV KEERGNKGAALTT++SLAGRY VLMPN    GGISR+I   
Sbjct: 174 RYKIQDVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNA 233

Query: 142 -ERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASLDRSAPF 200
            +R  L+  +  +  P+ MG IVRTAGL R+  E++ D DYL +LW  I+E +L  +AP 
Sbjct: 234 ADRKRLKSIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLRAAAPE 293

Query: 201 LIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLF 260
           LI+ +S++I RAIRD   +DI EV+++       A  F++ +MP +A ++K Y D+V LF
Sbjct: 294 LIHNDSDLIKRAIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLF 353

Query: 261 NRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARATKGSDIEETALQTNLEA 320
            R  +E Q+   +  VV+L SGG +VI+PTEALVSIDINS R+T+   IE+TA+ TNLEA
Sbjct: 354 QRASVEDQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEA 413

Query: 321 AEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLE 380
           A EIARQLRLRD+ GL+VIDFIDM    N R VE+ ++E L+ DRAR+QVGRIS FGL+E
Sbjct: 414 AREIARQLRLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLME 473

Query: 381 MSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRLIEEEALKDRTAEVRAQVPIP 440
           MSRQRLR  + E+S   CP C GTG++R   S  L  LR++EEEA + R + +  +    
Sbjct: 474 MSRQRLRTGVLEASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSVITLRASQE 533

Query: 441 VAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEV-------QRLRDDSPEAHSGQ 493
            A ++LN KR  + +IE R   RIV+LP+  +E     V       +R+   +P A   +
Sbjct: 534 AAFYVLNNKRRELDEIEQRYGVRIVVLPDGEIEGARMSVEPSGPRPERVVTYAPLAEE-E 592

Query: 494 SSYEIAAAAAEVEEVQPAAATRTLVRQE----AAVKTAPARANAPVPTEVAAPVAAPAAL 549
              ++     E EE++  AA     R E       +    R              AP   
Sbjct: 593 DDLDVIEDEEEEEEIEEEAAPERQERGERGDRGEEREGGRRRRRRRRRRGGQRDDAPGET 652

Query: 550 PEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPATERPARNEERRNGRQQSRNRNGRRD-- 607
            E +   G         + + E  A  V  +PA E       RR GR+  R    RR+  
Sbjct: 653 GEDN---GAEDGEEGEESAEIETDAEAVAAEPAAEGEDEGGSRRRGRRGRRGGRRRREGG 709

Query: 608 EERKPREERAPREERAPREERAPREPREETPTVERAPRE---ERAPRTPRAPREDRKPRG 664
           E      E A  +      E     P EE P  E AP E   E AP+T R PR  +    
Sbjct: 710 EAGAEAGETAGDDSAETVIEAEAAAPVEEAPVAEAAPEEAPAEEAPKTRRRPRARKAKDA 769

Query: 665 EREERVRELREPLDAAPAAAGVAVAAEERPARQPREERAPREERQPRAPREERQPRAEQA 724
             E    E+ E L         A    E PA +P  E A  + +  R  +++    AE A
Sbjct: 770 AAEPAAVEVTEAL---------AEVVAEAPAAEPVVEEAAEKPKPKRTRKKKADVEAEAA 820

Query: 725 AAASDEEVLTGEEQLQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSEETG 784
           AAA    V       +   +E AE  +P+R          R+++       V        
Sbjct: 821 AAAEAPAV-------EVVAEEAAEKPKPKR---------TRKKKVEPVAEEV-------- 856

Query: 785 ENTEAATSEPTGAELAAGLAVTAAVASSVISAP-AEAQAHEQAE 827
               A  + P   E+AA  A  A  + +V + P AE ++ E  E
Sbjct: 857 ----AVEAAPAVTEVAAAPAEAAPASEAVTADPAAEVESDENGE 896



 Score = 87.4 bits (215), Expect = 4e-21
 Identities = 42/82 (51%), Positives = 55/82 (67%)

Query: 1  MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE 60
          MLI+A   EE RVA+V G R+ + D ES   +Q K NIY  ++TR+EPSL+AAFVD+G  
Sbjct: 5  MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN 64

Query: 61 RHGFLPLKEISREYFKKAPEGR 82
          RHGFL   EI  +Y++   E R
Sbjct: 65 RHGFLAFSEIHPDYYQIPREDR 86



 Score = 27.7 bits (60), Expect = 0.004
 Identities = 31/98 (31%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 499 AAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPTEVAAPVAAPAALPEPSLFKGL 558
           AAAAAE   V+       +V +EAA K  P R        VA  VA  AA   P++ +  
Sbjct: 819 AAAAAEAPAVE-------VVAEEAAEKPKPKRTRKKKVEPVAEEVAVEAA---PAVTE-- 866

Query: 559 VKSLVSLFATKEEPVAPVVVEKPATE-RPARNEERRNG 595
               V+    +  P +  V   PA E     N E R G
Sbjct: 867 ----VAAAPAEAAPASEAVTADPAAEVESDENGEPRRG 900