Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

 Score = 99.4 bits (246), Expect = 7e-26
 Identities = 75/211 (35%), Positives = 108/211 (51%), Gaps = 14/211 (6%)

Query: 97  IIFEDNKLIVINKPCGI-AVHGGSGLNFGVIEAFRQLR--PDAKELELVHRLDRDTSGLL 153
           I+FED  ++VINKP  + +V G +  N   +    Q    PDA    +VHRLD +TSG++
Sbjct: 8   ILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRLQENGYPDAL---IVHRLDWETSGII 64

Query: 154 MIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWASSIKSVRAPLQKSNLRSGERMVEVDE 213
           ++A+     R L         +K Y AL  G  A    S+  PL+         +V+  E
Sbjct: 65  LLARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHVVD-HE 123

Query: 214 EGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQIRVHTLHAGHCIAGDTKYGDEDFSKEI 273
           +GK ALT ++++ R GD    VE  P+TGR+HQ+RVH L  GH + GD  Y +       
Sbjct: 124 QGKHALTFWRIVERCGDHCR-VELTPITGRSHQLRVHMLSIGHPLLGDRLYANPQAL--- 179

Query: 274 RDLGGKRLFLHAYMLTVPLPDGGE-LKLQAP 303
                +RL LHA ML+   P  G+ LK + P
Sbjct: 180 --AAHERLCLHASMLSFTHPVSGQRLKFECP 208