Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 320 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Pseudomonas putida KT2440

 Score =  107 bits (268), Expect = 3e-28
 Identities = 90/312 (28%), Positives = 149/312 (47%), Gaps = 33/312 (10%)

Query: 15  EVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVRVPPV 74
           EV  E  GQR+D           ++ +   +++G + V+   ++P   +  G  + +   
Sbjct: 10  EVPSELGGQRLDQVAAQLFAEYSRSRLTSWIKEGRLTVDGAVVRPRDLVHGGSQLAL--- 66

Query: 75  RVPERDEPVPLAQG--LLQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFG-VIEAFRQ 131
                 E    AQG  + + +E  I++ED+ ++VINKP G+ VH  +G   G ++ A   
Sbjct: 67  ------EAEQEAQGEWIAEDIELDIVYEDDHILVINKPAGLVVHPAAGHASGTLLNALLH 120

Query: 132 LRPDAKELE---LVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWAS 188
             PD   +    +VHRLD+DT+GL+++AK       L   ++   V + Y  +V G   +
Sbjct: 121 HVPDIVNVPRAGIVHRLDKDTTGLMVVAKTLQAQTKLVEQMQARKVSRIYECIVIGVVTA 180

Query: 189 SIKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQIR 248
             K + AP+ +       + + V + GK A++ ++VL+RF    T V  K  TGRTHQIR
Sbjct: 181 GGK-IDAPIGRHG--GMRQRMAVTDGGKPAVSHYRVLKRFRSH-THVRVKLETGRTHQIR 236

Query: 249 VHTLHAGHCIAGDTKYG---------DEDFSKEIRDLGGKRLFLHAYMLTVPLPDGGE-L 298
           VH  H G  + GD  YG              + ++     R  LHA  L +  P  GE +
Sbjct: 237 VHMAHVGFPLVGDQTYGGRFRIPPAASPTMVEAVKTF--PRQALHARFLALAHPITGEVM 294

Query: 299 KLQAPV--DEMW 308
           K ++P+  D +W
Sbjct: 295 KWESPLPDDFVW 306