Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 330 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  162 bits (410), Expect = 1e-44
 Identities = 106/300 (35%), Positives = 165/300 (55%), Gaps = 7/300 (2%)

Query: 11  VQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 70
           VQ L V+ E A  R+D +       V   L+ + LR G VRV+  R K   +L AG I+R
Sbjct: 4   VQTLTVAEEEAEIRLDRWFKRHFPSVGHGLLEKWLRAGNVRVDGKRAKSNQRLDAGQIIR 63

Query: 71  VPPVRV----PERDEPVPLAQGLLQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFGVI 126
           VPP+      P    P P+ + + + L+ ++++ D+++I +NKP G+AV GG+G+    +
Sbjct: 64  VPPLPTAEAPPREVRPAPVDEKIARMLQDAVLYMDDEVIALNKPPGLAVQGGTGMADKHL 123

Query: 127 EAFRQ-LRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGN 185
           +A+   L  D    +LVHRLD+DTSG+L++ +  +    L  A +     K Y ALV G 
Sbjct: 124 DAWLDALCFDGGRPKLVHRLDKDTSGVLLLGRTANATAKLAAAFKSRSARKCYWALVAGV 183

Query: 186 WASSIKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTH 245
                  + APL K   ++GE++    E+GK A+T ++V+      A  +E +P TGRTH
Sbjct: 184 PRYPQGRIDAPLAKLPGKAGEKVAVDKEDGKHAVTYYRVVDATLKRAAWLELEPRTGRTH 243

Query: 246 QIRVHTLHAGHCIAGDTKYGDEDFSKEIRDLGGKRLFLHAYMLTVPLPDGGE-LKLQAPV 304
           Q+R H L  G  I GD KYG +D   E   +  ++L LHA  + +P P  G+ L++ AP+
Sbjct: 244 QLRAHCLLLGTPIMGDGKYGGQDALVEGTGV-SRKLHLHARAVRLPHPRTGKVLEVVAPL 302