Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  107 bits (267), Expect = 4e-28
 Identities = 93/307 (30%), Positives = 146/307 (47%), Gaps = 30/307 (9%)

Query: 16  VSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRI--KPEYKLQAGDIVRVPP 73
           VS    GQR+D  L        ++ I   +    V VN G++  KP+ K+  G+ V +  
Sbjct: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVN-GQLCDKPKEKVLGGERVAIDA 69

Query: 74  VRVPERDEPVPLAQGLLQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFG-VIEAFRQL 132
               E DE +       Q +   I++ED+ ++VINKP  + VH G+G   G V+ A    
Sbjct: 70  ----EIDEEIRFEA---QDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY 122

Query: 133 RP---DAKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWASS 189
            P   D     +VHRLD+DT+GL+++AK       L  +L+   + + Y A+  G+  + 
Sbjct: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAG 182

Query: 190 IKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQIRV 249
             +V  P+ +   +     + V   GK A+T ++++  F    T +  +  TGRTHQIRV
Sbjct: 183 -GTVNEPISRHPTKRTH--MSVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGRTHQIRV 238

Query: 250 HTLHAGHCIAGDTKYG---------DEDFSKEIRDLGGKRLFLHAYMLTVPLPDGG-ELK 299
           H  H  H + GD  YG          E+F   +R     R  LHA ML +  P  G E++
Sbjct: 239 HMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKF--DRQALHATMLRLYHPVSGIEME 296

Query: 300 LQAPVDE 306
             AP+ +
Sbjct: 297 WHAPIPQ 303