Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 320 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Erwinia tracheiphila SCR3

 Score =  350 bits (898), Expect = e-101
 Identities = 181/301 (60%), Positives = 230/301 (76%), Gaps = 3/301 (0%)

Query: 8   TPSVQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGD 67
           TP VQ + +S + AGQRIDNFL  +LKGVPK++IYRILRKGE+RVNKGR+KPEYKL+AGD
Sbjct: 5   TPVVQKVTISADEAGQRIDNFLRTQLKGVPKSMIYRILRKGELRVNKGRVKPEYKLEAGD 64

Query: 68  IVRVPPVRVPERDEP-VPLAQGLLQRLEASIIFEDNKLIVINKPCGIAVHGGSGLNFGVI 126
            VR+PP+RV ER+E  V      +  L+ +I+FED+ L+V+NKP G AVHGGSGL+FGVI
Sbjct: 65  EVRIPPLRVAEREEEAVSPKLAKVAALDGAILFEDDHLLVLNKPSGTAVHGGSGLSFGVI 124

Query: 127 EAFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNW 186
           E  R LRPDA+ LELVHRLDRDTSG+L++AKKRS LR LH  LR  G+ K Y+ALV+G W
Sbjct: 125 EGLRALRPDARFLELVHRLDRDTSGILLVAKKRSALRSLHEQLREKGMQKDYLALVKGQW 184

Query: 187 ASSIKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGRTHQ 246
            S +K+V+ PL K+ L+SGER+V V  EGK + T FKV  R+  +AT+V+A PVTGRTHQ
Sbjct: 185 PSHLKTVQTPLLKNILQSGERVVRVSSEGKPSETRFKVEERYA-YATLVKASPVTGRTHQ 243

Query: 247 IRVHTLHAGHCIAGDTKYGDEDFSKEIRDLGGKRLFLHAYMLTVPLPDGGE-LKLQAPVD 305
           IRVHTLHAGH IA D +YG++ F  ++   G KRLFLHA  L    P  GE ++++AP+D
Sbjct: 244 IRVHTLHAGHPIAFDDRYGEKSFDMQLAGSGLKRLFLHALALRFTHPATGEVMRVKAPLD 303

Query: 306 E 306
           +
Sbjct: 304 D 304