Pairwise Alignments

Query, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas simiae WCS417

Subject, 319 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Escherichia coli ECOR38

 Score =  346 bits (888), Expect = e-100
 Identities = 183/315 (58%), Positives = 237/315 (75%), Gaps = 9/315 (2%)

Query: 7   QTPSVQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAG 66
           +TPSV+++ ++ + AGQRIDNFL  +LKGVPK++IYRILRKGEVRVNK RIKPEYKL+AG
Sbjct: 4   ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63

Query: 67  DIVRVPPVRVPERDEPVPLAQGLLQRLEAS---IIFEDNKLIVINKPCGIAVHGGSGLNF 123
           D VR+PPVRV ER+E        LQ++ A    I++ED+ ++V+NKP G AVHGGSGL+F
Sbjct: 64  DEVRIPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121

Query: 124 GVIEAFRQLRPDAKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVR 183
           GVIE  R LRP+A+ LELVHRLDRDTSG+L++AKKRS LR LH  LR  G+ K Y+ALVR
Sbjct: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181

Query: 184 GNWASSIKSVRAPLQKSNLRSGERMVEVDEEGKEALTLFKVLRRFGDFATMVEAKPVTGR 243
           G W S +KSV+APL K+ L+SGER+V V +EGK + T FKV  R+  FAT+V   PVTGR
Sbjct: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGR 240

Query: 244 THQIRVHTLHAGHCIAGDTKYGDEDFSKEIRDLGG--KRLFLHAYMLTVPLPDGGE-LKL 300
           THQIRVHT +AGH IA D +YGD +F +++ + G    RLFLHA  L    P  GE +++
Sbjct: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300

Query: 301 QAPVDEMWAKTVERL 315
           +AP+DE   + +++L
Sbjct: 301 EAPMDEGLKRCLQKL 315