Pairwise Alignments

Query, 314 a.a., multidrug transporter from Pseudomonas simiae WCS417

Subject, 306 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

 Score = 88.2 bits (217), Expect = 2e-22
 Identities = 84/287 (29%), Positives = 135/287 (47%), Gaps = 27/287 (9%)

Query: 34  WGTTWLGIKIAVESVPPLTSAGLRFLIAFPLFLCFAMVRREPILFPRESRWFFVFVTLSY 93
           WG+T+  I+I VES PPL  AG+RFL A  L L F ++R    L P         + L  
Sbjct: 20  WGSTYFVIRIGVESWPPLMMAGVRFLAAGILLLAFLLLRGHK-LPPLRPLLNAALIGLLL 78

Query: 94  FSVPYYLLNYGE-MHVSSGLTALLFSCMPVFILIFSALFLRERIYLSQVVGIGIGFGSLY 152
            +V   ++   E  +V SG+ A++ + +P+F L FS LF  +   L + VGI IG   + 
Sbjct: 79  LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIKTRKL-EWVGIAIGLAGII 137

Query: 153 MIIKSQGLHLDHAEFFGVLAILTAAIMHALCYVITKQKGSAISVITYNTLPIGI------ 206
           M+     L       +G + IL  +I  A   V     GS I      TLP+G+      
Sbjct: 138 MLNSGGNL---SGNPWGAILILIGSISWAFGSVY----GSRI------TLPVGMMAGAIE 184

Query: 207 ---AGLMLFVAGLWFETPTFEAITLRSWGALFYLGLVASVGGFIVYFMLLKRLSPIILSF 263
              AG++L +A +          +L  + A+ YL L  S+     Y  L++ +SP + + 
Sbjct: 185 MLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYLALFGSIIAINAYMYLIRNVSPALATS 244

Query: 264 VFIIFPVFAVIIGAWYEGVSISRDLMLYSAILLAGFAITKLPVEKLL 310
              + PV AV++G    G ++S+   L   +++  FA+  + + K L
Sbjct: 245 YAYVNPVVAVLLGTGLGGETLSKIEWLALGVIV--FAVVLVTLGKYL 289