Pairwise Alignments

Query, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas simiae WCS417

Subject, 204 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 68.6 bits (166), Expect = 7e-17
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 22/170 (12%)

Query: 34  RAYEELMRRYQRTLFNVCSRYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSIT 93
           RAY+EL+  YQ  +  V    +G  R AD+V Q+  L V+  L  FEG+S  KTWL +IT
Sbjct: 19  RAYKELVTTYQSAMRAVAYAIVGQ-RHADEVVQDAWLSVVRNLAKFEGRSSLKTWLLTIT 77

Query: 94  YNECITQYRKERRKRRLMD------ALSLDPLEEASEEKAPAP---------------EE 132
            N    +Y++ RR+  L D       L  D         A AP               E 
Sbjct: 78  ANAAKGRYKQNRREVLLDDLPSPHGTLGDDRFSPDDGHWAVAPYAWHQDTPEALLTEDEL 137

Query: 133 KGGLDRWLVYVNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRA 182
           +  L+  L+ ++ +   +LVLR    LE +EI +++ + LS  ++   RA
Sbjct: 138 RKCLEHTLLSLSELQSSVLVLRERQGLELEEICNLLTLSLSNVRVLLHRA 187