Pairwise Alignments

Query, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 61.6 bits (148), Expect = 9e-15
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 34  RAYEELMRRYQRTLFNVCSRYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSIT 93
           RA++ L+ +YQ  +  +  R++ +  +A DV QE  +K    L NF G S F TWLY I 
Sbjct: 20  RAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIA 79

Query: 94  YNECITQYRKERRKRRLMDALSLDPLE-----------EASEEKAPAPEEKGGLDRWLVY 142
            N     Y   R +R     +S +  E           E+ E      E +G + R +  
Sbjct: 80  INTA-KNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRTIQQ 138

Query: 143 VNPIDREILVLRFVAELEFQEIADIMHMGLSATKMRYKRALDKL 186
           +    R  L LR    L +++IA +M   +   + R  RA + +
Sbjct: 139 LPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAI 182