Pairwise Alignments

Query, 196 a.a., RNA polymerase sigma factor SigX from Pseudomonas simiae WCS417

Subject, 193 a.a., RNA polymerase sigma E factor from Pseudomonas putida KT2440

 Score = 63.2 bits (152), Expect = 3e-15
 Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 15/175 (8%)

Query: 34  RAYEELMRRYQRTLFNVCSRYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSIT 93
           RA++ L+ +YQ  +  +  R++ +  +A DV QE  +K    L NF G S F TWLY I 
Sbjct: 20  RAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIA 79

Query: 94  YNECITQYRKERRKRRLMDALSLDPLE-----------EASEEKAPAPEEKGGLDRWLVY 142
            N     Y   R +R     +S +  E           E+ E      E +G + R +  
Sbjct: 80  INTA-KNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERSLLRDEIEGTVHRTIQQ 138

Query: 143 VNPIDREILVLRFVAELEFQEIADIMHMGLSATK---MRYKRALDKLREKFAGET 194
           +    R  L LR    L +++IA +M   +   +    R + A+DK  +    ET
Sbjct: 139 LPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQPLLQET 193