Pairwise Alignments

Query, 326 a.a., porin from Pseudomonas simiae WCS417

Subject, 344 a.a., Outer membrane porin F from Pseudomonas putida KT2440

 Score =  365 bits (938), Expect = e-106
 Identities = 203/351 (57%), Positives = 238/351 (67%), Gaps = 32/351 (9%)

Query: 1   MKLKNTLGLAIGSLIAATSFGVLAQGQGAVEGELFYKKQYNDSVKHIE-DGFNPGARIGY 59
           MKLKNTLGLAIGSL+AATS G +AQGQGAVE E+FYKK++ DS +  + DG   G  IGY
Sbjct: 1   MKLKNTLGLAIGSLVAATSIGAMAQGQGAVETEIFYKKEFFDSQRDFKNDGNLFGGSIGY 60

Query: 60  FLTDDLSLNLSYDKTNHTRSNDGTGNQKIKGDTGSLVAQYHFGQAGVDSLRPYVEGGFGH 119
           FLTDD+ L L YD+ ++ R  DG   + IKG   +L A YHF     D++RPYV  GF H
Sbjct: 61  FLTDDVELRLGYDEVHNARGEDG---KNIKGSNTALDAVYHFNNP-YDAIRPYVSAGFSH 116

Query: 120 QSRTNVQADGHSGRDQTTFATVGTGVKYYFTNNLYARAGVEADYGLDNGKWDYSALVGLG 179
           QS   +   G  GRD +TFA VG G K+Y T+  YARAGVEA Y +D G  +++  VG+G
Sbjct: 117 QS---LGQTGRGGRDHSTFANVGAGAKWYITDMFYARAGVEAQYNIDQGDTEWAPSVGVG 173

Query: 180 VNFGGNAGAVAPAPTPA----------------------PAPEPTPEPEAP-VAQVVRVE 216
           +NFGG+      AP P                       PA         P VA+VVRVE
Sbjct: 174 LNFGGSPKQAEAAPAPVAEVCSDSDNDGVCDNVDKCPDTPANVTVDADGCPAVAEVVRVE 233

Query: 217 LDVKFDFDKSVVKPNSYGDVKNLADFMAQYPATNVEVAGHTDSVGPDAYNQKLSQRRADA 276
           LDVKFDFDKSVVKPNSYGD+KNLADFM QYP T   V GHTDSVGPDAYNQKLS+RRA+A
Sbjct: 234 LDVKFDFDKSVVKPNSYGDIKNLADFMKQYPQTTTVVEGHTDSVGPDAYNQKLSERRANA 293

Query: 277 VKQVLVKD-GVAPSRITAVGYGESRPVADNATEAGRAVNRRVEASVEAQAQ 326
           VKQVL +  GV  SR+ +VGYGE+RPVADNATE GRAVNRRVEA VEAQA+
Sbjct: 294 VKQVLTQQYGVESSRVDSVGYGETRPVADNATEEGRAVNRRVEAQVEAQAK 344