Pairwise Alignments

Query, 483 a.a., secretion protein from Pseudomonas simiae WCS417

Subject, 434 a.a., DNA uptake porin HofQ from Dickeya dianthicola ME23

 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 63/297 (21%), Positives = 119/297 (40%), Gaps = 44/297 (14%)

Query: 162 AQLMDRQRAELRVGAQSFAVVQVLNTDVVDRQYGTRANPVTVPGMASMIETFLAGEHKGL 221
           A + DRQR +  + A+    + + N  V   QY   A+ VT           L  +   L
Sbjct: 106 AYMKDRQRQQEELAAKQRQQLPLQNLSVT-LQYAEAADVVTS----------LQSQRGTL 154

Query: 222 LSDKSLGVIAYPDSNSLLIKGKPAQVSFIQKLVAELDIPKRAIEVSLWLVDVEREELKKL 281
           L+++   V     +N+LL++   A +  I+  + ELD P   ++++  +V +  E LK L
Sbjct: 155 LTERG-SVTVDKRTNTLLVRDVVAALEQIRPWIGELDKPLAQVQLAAHIVTISSEHLKAL 213

Query: 282 GLAWDEETKASTTRV----------------------LAPLDDSHLMAKVGALERRRRAK 319
           G+ W     A+T +                       LA L+   L  ++ ALE+    +
Sbjct: 214 GVNWGLGDAATTGQALQMNNFSVSLPVESPAINAGFHLAKLNGRLLDLELMALEQENEVE 273

Query: 320 VTTLPVILTQENVPAVFQDN----HTFYLPPRGDDRADWKPLRYGTQVSVLPRFVEANQI 375
           +   P + T     A  +      +       G    ++K    G +V+  PR +   QI
Sbjct: 274 IIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVT--PRILHGGQI 331

Query: 376 EMRLEVEE---GRLMSEASQRKKNAAVRQVGINSVVRVPQARRLWLGAFQRESEGRG 429
            + L + +   GR + +  +  +  A+ +  I + V V     + LG   ++ + +G
Sbjct: 332 TLSLLISQNMPGRAIKQ-GEGSEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQG 387