Pairwise Alignments

Query, 486 a.a., D-alanyl-D-alanine carboxypeptidase from Pseudomonas simiae WCS417

Subject, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

 Score =  171 bits (432), Expect = 7e-47
 Identities = 128/443 (28%), Positives = 217/443 (48%), Gaps = 24/443 (5%)

Query: 28  TTLPPSVQQALTKAKMQNTALSLVMIPLNGPGTPTVFNADVSVNPASTMKLVTTYAALEM 87
           T+ P +++Q L    +    +SL++       T    N+   + PAS +KL+TT AA+++
Sbjct: 25  TSTPATLEQLLADPALNGATVSLMVRDARSGSTLYQHNSRTRLIPASNLKLLTTAAAMDV 84

Query: 88  LGPNHQWKTEFYTDGTLSGGVLHGNLYLKGGGDPKLNMEKLWLLMRDLRANGVQQVTGDL 147
           LGP +++ T+  ++GTL G  L GNLYLKG GDP         L   L A GV+QV GDL
Sbjct: 85  LGPQYRFSTQLLSNGTLQGERLTGNLYLKGLGDPTTQFADYQALAAQLAAQGVRQVQGDL 144

Query: 148 VLDRSFFNQPLLPEFNDDGNDENKPFLVKPDALLVNLKALRFVTRNDSGRVLVSVEPP-- 205
           V D +FF+   L   +   +DE+  +  +  AL V+       T  D+G +LV+ + P  
Sbjct: 145 VFDDTFFDAERL-GVDWAHDDESTYYGAQISALTVSPN-----TDFDAGTLLVTAKAPSG 198

Query: 206 ------IASIRIDNQVKVSNAKQCTGDVRYNPVTAADGSVTVTVSGQLADGCSSQTYLSL 259
                 +      + V++SN +  +G      +T   G+  + ++G LA G  S+ ++S+
Sbjct: 199 VGQPVSVVVSPSTDYVQLSN-RAVSGPGNNYGITRQHGTNLLQLTGTLAPGKQSRQWVSV 257

Query: 260 LDHATYTAGAVRAIWKELGGTIQGRD-IQAPVPKDAKVLARAFSPDLAEIIRDINKYSNN 318
            +     A        + G  + GR  I    P  A+VLA   S  L  ++  + K SNN
Sbjct: 258 WEPTQLVANLFEQALAQQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLTPLLKLSNN 317

Query: 319 TMAQQLFLSLGAQFRNDADGDDAKAAQRVVRQWLAKKGITAPHLVMENGSGLSRAERVSA 378
            M++    ++G   R  ++   A+A    V  ++ ++G+    L   +GSGLSR   VS+
Sbjct: 318 NMSEAFLKAMG---RKASNAGTAQAGVAAVADFMRRQGLDPMTLSQVDGSGLSRRNLVSS 374

Query: 379 REMATMLQAAWKSPYAAEYISSMPITG-----TDGTMRKRLKTTAMRGEAHVKTGTLNTV 433
           + +  +L A  K P+   + +++PI G     + G++R RL+ T      H KTG++  V
Sbjct: 375 QNLTDLLLATAKQPWFEAWYNALPIAGNTDRISGGSLRYRLRGTPAENNLHAKTGSMAGV 434

Query: 434 RAIAGFSRDNNGNTWAVVAILND 456
            +++G+  D  G       I N+
Sbjct: 435 SSLSGYITDAQGRRLVFSMISNN 457