Pairwise Alignments

Query, 396 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 381 a.a., Inner membrane protein YdcO from Xanthobacter sp. DMC5

 Score =  282 bits (722), Expect = 1e-80
 Identities = 153/371 (41%), Positives = 221/371 (59%), Gaps = 7/371 (1%)

Query: 18  SAVVAGFIAMMTGYTSSLVLMFQAGQAAGLTTAQISSWIWAISIGMAVCSIGLSLRYRTP 77
           SA+V+ F+A + G+  +L L+  A  A G + AQ SSW+ A+ + +A  S  LS+R+R P
Sbjct: 4   SAIVSAFVAALVGFGGTLALILSAAAAVGASPAQASSWVAALCLAVAGSSAFLSIRHRLP 63

Query: 78  ITIAWSTPGAALLITSLGGVSYGEAIGAYITCAVLVTICGMTGSFEKLVKRIPASLAAAL 137
           I  AWSTPGAALL     G+    A GA++   +L+  C        LV RIP ++AAA+
Sbjct: 64  IITAWSTPGAALLAAFGAGIGMERAAGAFLVAGLLMVACAAVKPLGTLVARIPVAVAAAM 123

Query: 138 LAGILFKIGSEIFVAAQHRTGLVLGMFFTYLVIKRLSPRYAVLAALLIGTALS---GLMG 194
           LAG+L +  + +   A     LVL +   + + +RL+P ++V AAL+ G A +   G +G
Sbjct: 124 LAGVLVRFVTALAEHAVKSPALVLPVVAAFFLTRRLAPSWSVPAALVAGIAAALGLGAVG 183

Query: 195 LLDFSGFHLEVATPVWTTPHFSLAATISIGIPLFVVAMTSQNMPGVAVLRADGYNVPASP 254
            +       E++  VW TP F     ISI +PLF+V M SQN+PG AVL A GY  P   
Sbjct: 184 PMPAP----ELSALVWVTPEFDSGVLISIALPLFLVTMASQNLPGFAVLTASGYVPPVRS 239

Query: 255 LITATGLASLVLAPFGSHGINLAAISAAICTGPHAHEDRNKRYTAAVWCGVFYGIAGVFG 314
           ++  TG+AS++ APFG+H  NLAAI+AA+CTGP    D   R+ A     +FY +    G
Sbjct: 240 ILATTGIASVLTAPFGAHASNLAAITAALCTGPDCDPDPRARWKAGPVYALFYLLLAAAG 299

Query: 315 ATLAALFAALPKELVLSIAALALFGSIINGLSIAMNEPKEREAALITFMVTASGLTLFSI 374
           A+L A+FAALP  LV +IA LAL   +   L+ A+N  K+R AA++TF  TASG++   +
Sbjct: 300 ASLVAVFAALPPALVATIAGLALIAPLTGSLTAALNVDKDRTAAIVTFATTASGISALGL 359

Query: 375 GSAFWGIVAGV 385
           G+  WG+ AG+
Sbjct: 360 GAPVWGLAAGL 370